Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C01
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 635 PXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPPP 742
           P   P P  PP      PP    PPP   G G PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPP-PPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = +2

Query: 623 PXXNPXLG--PPPXXPPXXXXXXPPGGGXPPPXXGGFG 730
           P   P +G  PPP  PP      PP    PPP     G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 620 PPXXNPXLGPPPXXPPXXXXXXPPGGGXPPP 712
           PP      GPPP  PP       P    PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +2

Query: 620  PPXXNPXLGPPPXXPPXXXXXXP-PGGGXPPPXXGGFGXPP 739
            PP   P +G PP  PP      P P  G PP        PP
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +1

Query: 613  GXPPXXKPXLGAPPXXXPXXXXXXPPGGGXTXPXXGGXWXAPPXXXKNXXXXXXPXPPP 789
            G PP  KP + APP   P       P      P       APP    +      P PPP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS--VGVPPVPPP 1213



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +2

Query: 620  PPXXNPXLGPPPXXPPXXXXXXP-PGGGXPPPXXGGFGXPPP 742
            PP   P  G PP  PP      P P  G PP        P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 17/61 (27%), Positives = 19/61 (31%)
 Frame = +1

Query: 613  GXPPXXKPXLGAPPXXXPXXXXXXPPGGGXTXPXXGGXWXAPPXXXKNXXXXXXPXPPPQ 792
            G PP  KP + APP   P      P       P        PP           P PPP 
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP--VPKPAAGVPPVPPPS 1195

Query: 793  K 795
            +
Sbjct: 1196 E 1196



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +1

Query: 613  GXPPXXKPXLGAPPXXXPXXXXXXPPGGGXTXPXXGGXWXAPP 741
            G PP  KP + APP   P       P      P       APP
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 620  PPXXNPXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPP 739
            PP   P   PP   P       PP    PP      G PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +1

Query: 613  GXPPXXKPXLGAPPXXXPXXXXXXPPGGGXTXPXXGGXWXAPPXXXKNXXXXXXPXP 783
            G PP  KP + APP   P      P       P       APP    +      P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPK-PSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +2

Query: 620  PPXXNPXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPP 739
            PP   P +  PP   P      P      PP     G PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 692 GGGXPPPXXGGFG 730
           G G PPP  GGFG
Sbjct: 196 GSGGPPPGPGGFG 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.146    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,493
Number of Sequences: 5004
Number of extensions: 19887
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)