Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_C01
         (970 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.21 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    26   1.5  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    24   6.0  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 623 PXXNPXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPPP 742
           P   P +GPPP          P G   P P   GFG   P
Sbjct: 585 PPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAP 624



 Score = 27.1 bits (57), Expect = 0.84
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 635 PXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPPP 742
           P   PPP  PP      PP      P  G  G  PP
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 641 LGPPPXXPPXXXXXXPPGGGXPPP 712
           LGPPP  PP       P    PPP
Sbjct: 528 LGPPPPPPPGGAVLNIPPQFLPPP 551


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 620 PPXXNPXLGPPPXXPPXXXXXXPPGGGXPPPXXGGFGXPPP 742
           PP  N  + PP    P      P   G PP   G  G  PP
Sbjct: 71  PPKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPP 111


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 711 GGGXPPPGGXXXXXXGGXXGGGPKXGFXXGG 619
           GG   P  G      GG  GGG   G   GG
Sbjct: 842 GGAGGPLRGSSGGAGGGSSGGGGSGGTSGGG 872



 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 741 GGGXPXPPXXGGGXPPPGGXXXXXXGGXXGGG 646
           GGG   P   G G    GG      GG  GGG
Sbjct: 539 GGGSDGPEYEGAGR---GGVGSGIGGGGGGGG 567


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.314    0.146    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,991
Number of Sequences: 2352
Number of extensions: 7088
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 105652443
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)