Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B24
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 149 4e-37
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 29 0.88
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 1.5
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 2.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 3.6
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 4.7
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 26 6.2
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 6.2
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 8.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 8.2
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 149 bits (362), Expect = 4e-37
Identities = 71/143 (49%), Positives = 96/143 (67%)
Frame = +3
Query: 135 FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 314
F+PL +L+N+++Q SL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 315 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 494
DAF KF K KV GFDNL AMEIDPN+ + E+ E+ + G+MQ++
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120
Query: 495 PGIDEAMSYAEVMKLVKGMNFSC 563
PGIDEA+++AE++K +K M F C
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDC 143
Score = 94.7 bits (225), Expect = 2e-20
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 565 VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLADFNSDMFSNKM 744
V+FDTAPTGHTLR L+FP V+E+ LGKL L S+ P INQ+ S+ G+ D+F KM
Sbjct: 144 VIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLF-GKM 202
Query: 745 DEMLSVIRQVNAQFKDPE-SNYICVCL 822
+ M + I +VN QFK+P+ + ++CVC+
Sbjct: 203 ESMRANISEVNKQFKNPDLTTFVCVCI 229
Score = 57.2 bits (132), Expect = 3e-09
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +2
Query: 788 KTPNQTTFVCVCIAEFLSLYETERLVQELT 877
K P+ TTFVCVCI+EFLSLYETER++QELT
Sbjct: 217 KNPDLTTFVCVCISEFLSLYETERMIQELT 246
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 196 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 312
+LE E GKLRA+ VS F L S+ I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 655 LKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKD 792
LK+KV PFIN++ L S K+ E + + + A+ +D
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 578 VSNTTATKVHAFY*FHHLSIAHSLINT 498
VS T+VHAFY + L + S INT
Sbjct: 259 VSKEELTRVHAFYSLNDLKLETSTINT 285
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 587 VGAVSNTTATKVHAFY*FHHLSIAHSLINTRKSSNNLLHDTLVQS 453
VG + + K + F +L I H L NT + + ++HD + ++
Sbjct: 78 VGTPDSNSTPKSSNYDPFENLEILHQLSNTPRDKDAVIHDKIEEN 122
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 658 KSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFK-DPESNYICVCLYRR 831
K+ + P ++ +L + D+ + N D ++ Q+ +K D + NY+ VC Y R
Sbjct: 339 KNDIQPAVSIDGTLLNVGDWV--LIRNPADSSKPIVSQIYRIWKSDDDINYVTVCWYLR 395
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 304 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 402
T+ L ++ +F++YQ +K T +W+LI++L
Sbjct: 2 TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 692 RHCLD*QISTRTCSATKWMRCYQLSDK*M-HSSKTPNQTTFVC 817
+H L+ Q+S RT +W+ C + ++ H ++ T +C
Sbjct: 3 KHVLNAQVSIRTACCRRWIDCIECHNEIADHPLLKTSELTLIC 45
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 250 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 429
F C KF NL LI T S+ + FL Y + + L ++L QSC+ +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227
Query: 430 LKENLRL*D 456
K + L D
Sbjct: 228 TKGLMYLFD 236
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 155 VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 262
+++ +S +D + RER WEN +Q S+ E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -3
Query: 400 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 278
T G +S L NP F G E W LW + +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 635 PRSTTCGNDRSLRVCPVGAVSNTTATKVH 549
P TCG DR+LR+ + N T +H
Sbjct: 230 PLLLTCGFDRTLRIYQLDGKVNPLVTSLH 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,747
Number of Sequences: 5004
Number of extensions: 63227
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -