Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B24
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 134 9e-32
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 62 4e-10
09_05_0004 + 20021394-20023430 31 0.93
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729... 31 1.2
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807... 29 3.7
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 29 4.9
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 29 4.9
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 29 4.9
02_03_0082 - 15021751-15022330,15022397-15022626 29 4.9
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 28 8.6
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 134 bits (324), Expect = 9e-32
Identities = 63/138 (45%), Positives = 94/138 (68%)
Frame = +3
Query: 147 EPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISDAFD 326
+P+++N+++Q+SL+W+F CS L++ L+ R+SVL+ISTDPAHN+SDAF
Sbjct: 12 DPTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQ 71
Query: 327 QKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGID 506
Q+F+K PT V+GF+NL+AMEIDP V + E E G + E+ A PG+D
Sbjct: 72 QRFTKFPTLVRGFNNLYAMEIDPKVENDDFANEGME----------GFLSELTNAIPGVD 121
Query: 507 EAMSYAEVMKLVKGMNFS 560
EAMS+AE++KLV+ M++S
Sbjct: 122 EAMSFAEMLKLVQTMDYS 139
Score = 93.5 bits (222), Expect = 2e-19
Identities = 48/96 (50%), Positives = 60/96 (62%), Gaps = 10/96 (10%)
Frame = +1
Query: 565 VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLAD-FNSDMFSNK 741
VVFDTAPTGHTLRLL FP +E+GL K+M LK+K +NQ LFGL D N D +
Sbjct: 141 VVFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQATRLFGLGDELNEDAMLGR 200
Query: 742 MDEMLSVIRQVNAQFKDP---------ESNYICVCL 822
++ M VI QVN QFKDP + ++CVC+
Sbjct: 201 LEGMKDVIEQVNRQFKDPIWSNLLEKDLTTFVCVCI 236
Score = 52.0 bits (119), Expect = 6e-07
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 803 TTFVCVCIAEFLSLYETERLVQELTR 880
TTFVCVCI EFLSLYETERLVQEL +
Sbjct: 229 TTFVCVCIPEFLSLYETERLVQELAK 254
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 62.5 bits (145), Expect = 4e-10
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +1
Query: 565 VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFG 705
+VFDTAPTGHTLRLLS P ++ +GK+++L+SK+A + I S+FG
Sbjct: 229 IVFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIASATSAIKSVFG 275
Score = 45.6 bits (103), Expect = 5e-05
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 30/140 (21%)
Frame = +3
Query: 231 CSCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVKGFDN------------- 371
C+ SLAV+ + L++STDPAH++SD+F Q S V + F++
Sbjct: 85 CAASLAVRFANNGHPTLVVSTDPAHSLSDSFAQVASPVEHLLSRFEDLSGGALVPVEGPE 144
Query: 372 --LFAMEIDPNVGLTELPEEYFEGESEAMR-----LDKGVMQEIVGAF----------PG 500
LFA+EI+P E + ++ + GV+ E +G PG
Sbjct: 145 APLFALEINPEKAREEFRAASQKNGGTGVKDFMDGMGLGVLAEQLGELKLGELLDTPPPG 204
Query: 501 IDEAMSYAEVMKLVKGMNFS 560
+DEA++ ++VM+ ++ +S
Sbjct: 205 LDEAIAISKVMQFLEAQEYS 224
>09_05_0004 + 20021394-20023430
Length = 678
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 554 VHAFY*FHHLSIAHSLINTRKSSNNLLHDTLVQSHS 447
+HAF H+ +AH L + S +N+ +TL+ HS
Sbjct: 197 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHS 232
>02_05_0571 -
30072521-30072595,30072681-30072749,30072826-30072900,
30072981-30073050,30073168-30073279,30073576-30073674,
30073847-30073939,30074994-30075062,30076845-30076911
Length = 242
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 234 SCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKV 344
+C +A L ++ E + I+S DP I ++FD+ F V
Sbjct: 120 NCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYV 156
>04_01_0616 -
8069107-8069217,8070127-8070499,8070514-8070751,
8070881-8071189,8071225-8071363
Length = 389
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +3
Query: 639 RQADAFEVKGCPL---HQSNCVTVWTSRFQLGHVQQQNG*DV 755
RQA+ EV+ C L + C VW + GHV +G D+
Sbjct: 331 RQAEMLEVRSCSLDLKQRHPCQQVWKFDLEKGHVNVVSGADI 372
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 29.1 bits (62), Expect = 4.9
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = +1
Query: 559 VAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGLADFNSDMFSN 738
VA DT H R + FP+ R G + + Q+A L G A M
Sbjct: 502 VAAPTDTFTFKHCSRKMVFPEFANRMQGNQAWYCLDLLEVLCQLAEL-GYATMVRSMLDY 560
Query: 739 KM----DEMLSVIRQVNAQFKDPESNYICVCLYRRVPIALRNRTFSSRINAMWN 888
+ D +L + +N + + + C++ P+ L++ T+SS +N++W+
Sbjct: 561 PLIHCPDVLLLGVSHINTPYNLLQYEVLS-CVF---PMILKDTTYSSLMNSLWH 610
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 237 CSLAVQLSKVRESVLIISTDPA--HNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLT 410
C++A++L++ +++++ DPA IS + +V TK FD A D + L
Sbjct: 72 CAMALELARRGLNLVLVGRDPARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLR 131
Query: 411 ELPE 422
L E
Sbjct: 132 RLRE 135
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 196 SLEGKAELGKLRAVAVSQFSCRKFANL 276
++E + GK RA+ VS FSC+K +L
Sbjct: 80 AMEKLYDSGKARAIGVSNFSCKKLEDL 106
>02_03_0082 - 15021751-15022330,15022397-15022626
Length = 269
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 420 EEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGM 551
+E E E A +LDK + +PG DE ++ +++KLVK +
Sbjct: 49 KEDCESEKGAHKLDKMLEDHRTSLYPGCDE-KAFGDLLKLVKNI 91
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 414 LPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFS 560
+ +YF G S + + GV E VGA I + +S V K+ G F+
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFT 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,046,692
Number of Sequences: 37544
Number of extensions: 370967
Number of successful extensions: 944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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