Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B23
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   147   1e-35
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   135   3e-32
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    97   1e-20
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    97   1e-20
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    35   0.090

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  147 bits (356), Expect = 1e-35
 Identities = 72/167 (43%), Positives = 96/167 (57%)
 Frame = +3

Query: 375 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 554
           K P         LD  +A+  FK+L+KYRPE+                         RPN
Sbjct: 76  KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPN 135

Query: 555 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 734
           T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 195

Query: 735 HRKTCTCLALTNVESGDRASFSKVVEXXXXXXXXXXXXXXKHWGGGV 875
            RKT   +AL +V   D+++ +K+VE              KHWGGGV
Sbjct: 196 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGV 242



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +2

Query: 236 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 400
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  135 bits (327), Expect = 3e-32
 Identities = 72/167 (43%), Positives = 96/167 (57%)
 Frame = +3

Query: 375 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPN 554
           K P         LD  +A+  FK+L+KYRPE+                         RPN
Sbjct: 76  KVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK--------------------RPN 115

Query: 555 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 734
           T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 175

Query: 735 HRKTCTCLALTNVESGDRASFSKVVEXXXXXXXXXXXXXXKHWGGGV 875
            RKT   +AL +V   D+++ +K+VE              KHWGGGV
Sbjct: 176 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGV 222



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +2

Query: 236 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 400
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +2

Query: 236 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 400
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = +2

Query: 236 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 400
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 375 KCPLRSTNLPRTLDKTTAKGLFKILEKYRPET 470
           K P         LD  +A+  FK+L+KYRPE+
Sbjct: 179 KVPPTINQFRTALDSHSARQAFKLLDKYRPES 210


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +3

Query: 558 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 725
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/86 (22%), Positives = 41/86 (47%)
 Frame = +3

Query: 555 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 734
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 735 HRKTCTCLALTNVESGDRASFSKVVE 812
             +  + L         +  + +V E
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAE 153


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -1

Query: 512 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCSG 402
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGG 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,984
Number of Sequences: 27780
Number of extensions: 339887
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)