Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B22
         (997 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    37   0.004
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    35   0.016
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   3.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   9.5  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 27/67 (40%), Positives = 34/67 (50%)
 Frame = +1

Query: 373 MSVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGR 552
           MS  +E  V  A+LAEQAERY++M   MK+V                SVA  K      R
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVA-CSNDKLSVEERNLLSVAY-KNIIGARR 58

Query: 553 SSWRVIS 573
           +SWR+IS
Sbjct: 59  ASWRIIS 65


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = +1

Query: 376 SVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGRS 555
           +  +E+ V  A+LAEQAERY+ M   MK V                SVA  K      R+
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNL-LSVAY-KNVIGARRA 60

Query: 556 SWRVIS 573
           SWR++S
Sbjct: 61  SWRIVS 66


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 252 DLHHHRIRDLKXKTKRLNLPVNFLVFQF 169
           +L+    RDL  KTKRL  P N L+ QF
Sbjct: 119 ELNFVAARDLLIKTKRLPKPFNNLLIQF 146


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -2

Query: 294 AQYQFFSCAERYTLDLHH------HRIRDLKXKTKRLNLPVNFLVFQFHPRSFLXKP 142
           A Y+     +  T++ HH       R+RD+K    +L    N  +  + PR+ + KP
Sbjct: 490 AAYRPMEKQDPATVERHHIQAEATQRVRDMKLDLTKLESKTNDEIRSYRPRNVVIKP 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,368
Number of Sequences: 5004
Number of extensions: 50110
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)