Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B22
         (997 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    63   3e-10
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    63   3e-10
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    62   5e-10
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    62   5e-10
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    29   5.2  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    29   5.2  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 44/80 (55%), Positives = 49/80 (61%)
 Frame = +1

Query: 373 MSVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGR 552
           MS   EELVQRA+LAEQAERYDDMAAAMK+VTE              SVA  K      R
Sbjct: 1   MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNL-LSVAY-KNVVGARR 58

Query: 553 SSWRVISXN*XENPXGSKKK 612
           SSWRVIS +  +   GS+KK
Sbjct: 59  SSWRVIS-SIEQKTEGSEKK 77


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 44/80 (55%), Positives = 49/80 (61%)
 Frame = +1

Query: 373 MSVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGR 552
           MS   EELVQRA+LAEQAERYDDMAAAMK+VTE              SVA  K      R
Sbjct: 1   MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNL-LSVAY-KNVVGARR 58

Query: 553 SSWRVISXN*XENPXGSKKK 612
           SSWRVIS +  +   GS+KK
Sbjct: 59  SSWRVIS-SIEQKTEGSEKK 77


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 43/80 (53%), Positives = 49/80 (61%)
 Frame = +1

Query: 373 MSVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGR 552
           MS  KEELV RA+LAEQAERYDDMAA+MK+VTE              SVA  K      R
Sbjct: 1   MSDGKEELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNL-LSVAY-KNVVGARR 58

Query: 553 SSWRVISXN*XENPXGSKKK 612
           SSWRVIS +  +   GS+KK
Sbjct: 59  SSWRVIS-SIEQKTEGSEKK 77


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 43/80 (53%), Positives = 49/80 (61%)
 Frame = +1

Query: 373 MSVDKEELVQRARLAEQAERYDDMAAAMKEVTEXXXXXXXXXXXXSFSVAL*KCRXVPGR 552
           MS  KEELV RA+LAEQAERYDDMAA+MK+VTE              SVA  K      R
Sbjct: 1   MSDGKEELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNL-LSVAY-KNVVGARR 58

Query: 553 SSWRVISXN*XENPXGSKKK 612
           SSWRVIS +  +   GS+KK
Sbjct: 59  SSWRVIS-SIEQKTEGSEKK 77


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 499 SSVAKLDARFPSLPSSRPPCRHIAQLVRPIWHVAPVLPCRRTS 371
           SS A  DAR P  P + PP  +    V P+ H AP      TS
Sbjct: 752 SSQASADARNPLPPKTSPPVSNTPITVAPV-HAAPTTSAPSTS 793


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
           protein 25, isoforma protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 499 SSVAKLDARFPSLPSSRPPCRHIAQLVRPIWHVAPVLPCRRTS 371
           SS A  DAR P  P + PP  +    V P+ H AP      TS
Sbjct: 859 SSQASADARNPLPPKTSPPVSNTPITVAPV-HAAPTTSAPSTS 900


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,248
Number of Sequences: 27780
Number of extensions: 317207
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)