Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B18
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    44   2e-05
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.66 
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.7  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 332 DILKKLTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYFSAIAA 466
           ++L ++   I P L+   KG  GR+G+ GG   YTGAPY+S++++
Sbjct: 10  NLLTRVKRIIPPLLDTFHKGQAGRVGVFGGCQHYTGAPYYSSMSS 54



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +3

Query: 477 GADIVYVITTEDAAPVIKIYSPDLIVYPFLNKK 575
           G+D  ++   ++AA VIK YSPDLIV+PFL +K
Sbjct: 58  GSDQSHIFCEKEAANVIKSYSPDLIVHPFLREK 90


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 347 LTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYF----SAIAAF 469
           +T  ++P    K+KGD+  +G I G   Y G   +    SA+A F
Sbjct: 124 MTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCSTKSALAQF 168


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -1

Query: 381 FPLSVGTILLVNFFKISLEVRKFI-LHSLPLVIWKVNKITCKITRIILKLGVIINDMNYK 205
           F LS    +L +F K S+++       S  +  +  + I   +T  +  L   +ND++Y+
Sbjct: 216 FRLSGPNEVLESFAKNSVDIEMLKPFVSQRIDAFSQDPILLAVTAKLSALQKKVNDVSYR 275

Query: 204 FRTLCVTIRGAK 169
           F+T+  ++ GAK
Sbjct: 276 FKTISSSLYGAK 287


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 272 LFTFQITNGNECKMNFLTSKDILKKLTSNIVPTLNG 379
           +  F+I +G  C+++ LTS +       + +P LNG
Sbjct: 34  ILNFEIPSGVSCQLSSLTSSNFASGCKISAMPILNG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,280
Number of Sequences: 5004
Number of extensions: 38765
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)