Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B18
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...    52   5e-07

>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 28/54 (51%), Positives = 36/54 (66%)
 Frame = +3

Query: 468 SRAGADIVYVITTEDAAPVIKIYSPDLIVYPFLNKKYASKISSLLPKMDAIXIG 629
           SR GAD++++    DAA VIK YSPDLIV+P +    A+ I   L +MDAI IG
Sbjct: 44  SRLGADLIHIFCDPDAAQVIKGYSPDLIVHPGMT---ANSIIPKLSRMDAIVIG 94



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 344 KLTSNIVPTLNGKSKGDLGRIGIIGGSVEYTGAPYFSAIAA 466
           KL   + P L    KGD G++G+IGGS+EYTGAPYF+A +A
Sbjct: 6   KLLPKLTPHLR---KGDCGKMGVIGGSLEYTGAPYFAASSA 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,890
Number of Sequences: 27780
Number of extensions: 206983
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)