Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B14
         (807 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CCBEE Cluster: DnaJ domain containing protein; ...    35   2.8  
UniRef50_Q80ZP0 Cluster: 4930503B20Rik protein; n=7; Eukaryota|R...    35   2.8  

>UniRef50_UPI00006CCBEE Cluster: DnaJ domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: DnaJ domain
           containing protein - Tetrahymena thermophila SB210
          Length = 373

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 93  NYTRILGVSKNASESEINE-ITQTC*RVHPGQNPAAGD 203
           +Y +ILGVS+NA  ++I     +   + HP +NP AGD
Sbjct: 38  DYYKILGVSQNAKSADIKSAFFKLAKKYHPDKNPTAGD 75


>UniRef50_Q80ZP0 Cluster: 4930503B20Rik protein; n=7; Eukaryota|Rep:
           4930503B20Rik protein - Mus musculus (Mouse)
          Length = 234

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  ITNYTRILGVSKNASESEINE-ITQTC*RVHPGQNP 191
           + NY ++LGV +NAS S+I     Q   +VHP +NP
Sbjct: 1   MVNYYKVLGVPRNASSSDIKRAFHQLALQVHPDKNP 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,138,959
Number of Sequences: 1657284
Number of extensions: 5168612
Number of successful extensions: 6783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6773
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)