Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B14
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1300 + 25972496-25972582,25972664-25972723,25973786-259738...    31   1.4  
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92...    29   4.4  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    29   5.8  

>08_02_1300 +
           25972496-25972582,25972664-25972723,25973786-25973868,
           25974120-25974166,25975194-25975352,25975466-25975644,
           25975738-25975818,25975903-25976046,25976246-25976347
          Length = 313

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 90  TNYTRILGVSKNASESEINE-ITQTC*RVHPGQNP 191
           T Y  +LGVS  A+ESEI +       +VHP +NP
Sbjct: 5   TGYYDVLGVSPTATESEIKKAYYMKARQVHPDKNP 39


>06_01_0120 -
           926226-926289,926821-926887,927122-927170,927257-927313,
           927826-927897,928145-928236,928331-928403,928870-928944,
           929207-929314,929372-929422,929834-929959,930324-930362,
           930452-930535,931018-931109,931217-931300,931410-931524
          Length = 415

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 63  LHHGKKWLIT-NYTRILGVSKNASESEINEITQT-C*RVHPGQNPAAGD 203
           L HG + +   +Y  +LGVS+NAS+ EI +       ++HP  N    D
Sbjct: 64  LFHGTRPVAARDYYDVLGVSRNASQGEIKKAYYALAKKLHPDTNKGDSD 112


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 90  TNYTRILGVSKNASESEINE-ITQTC*RVHPGQNP 191
           T Y  +LGVS  A+E EI +       +VHP +NP
Sbjct: 5   TGYYDVLGVSPTATEVEIKKAYYMKARKVHPDKNP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,515,828
Number of Sequences: 37544
Number of extensions: 141131
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)