Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B14
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   9.0  

>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  NYTRILGVSKNASESEINE-ITQTC*RVHPGQNPAAG 200
           +Y ++LG+SK A++ EI +   +   + HP +N  AG
Sbjct: 4   DYYKVLGISKGATDDEIKKAYRKMALKYHPDKNKEAG 40


>AL023856-5|CAC15865.2|  343|Caenorhabditis elegans Hypothetical
           protein Y94A7B.8 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 170 SLASLCNFVNFGFAGIFRNAQNSRIICYQPFFPVM*RIKEQNSLR 36
           SL S+ NF N G+  I  N+    ++    FF V+ R+K   +L+
Sbjct: 180 SLISVANFGNSGWTNIRENSLTCFVLLEIIFFVVLIRVKMNRALK 224


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
 Frame = -3

Query: 490 PPXPXGGQKXXXGXPXXXFPXKXFXXXPXGXXVFSP----GXXXPGQLFXPPXPR----G 335
           PP P G      G P    P       P G     P    G   PG +  PP PR    G
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359

Query: 334 XQXFPKXPXXNP 299
              +P  P   P
Sbjct: 360 PGMYPPPPPSRP 371


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
 Frame = -3

Query: 490 PPXPXGGQKXXXGXPXXXFPXKXFXXXPXGXXVFSP----GXXXPGQLFXPPXPR----G 335
           PP P G      G P    P       P G     P    G   PG +  PP PR    G
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369

Query: 334 XQXFPKXPXXNP 299
              +P  P   P
Sbjct: 370 PGMYPPPPPSRP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,321
Number of Sequences: 27780
Number of extensions: 143452
Number of successful extensions: 206
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)