Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B12
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.5  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 369 TVYYQFQGKLWAVSCSVVF 313
           TV  +F GKLW +S  +++
Sbjct: 11  TVANKFSGKLWPISIVLIY 29


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 141 LN*KMENDLDKVVEEIMSMPKVN 209
           L+ K +ND ++  E+ + +PKVN
Sbjct: 172 LSGKSDNDAEEYDEQSLRVPKVN 194


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 595 YFGGQLKVNNNFNLFPITRHNLLRDVK 515
           +F  Q+K  + F +FP+T+   +R++K
Sbjct: 220 HFRRQIKSVDLFVIFPLTKAEKVRNLK 246


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 595 YFGGQLKVNNNFNLFPITRHNLLRDVK 515
           +F  Q+K  + F +FP+T+   +R++K
Sbjct: 176 HFRRQIKSVDLFVIFPLTKAEKVRNLK 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,042
Number of Sequences: 336
Number of extensions: 3988
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)