Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B12
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   4.7  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.2  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 277  AESTCAAPFDAKHSPCGSAIRQPLTLGIDMISST-TLSRSFS 155
            A ST   PF+A  S   +  ++PL L  + ++ T ++ RSF+
Sbjct: 1321 ASSTLQVPFNASSSSLATPKKEPLRLDTNSLTLTSSMPRSFT 1362


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
 Frame = -2

Query: 406 IAPVIVPCRCMRHCLLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFD-AKHSPC 230
           +A  + P         SV   +    +   +  A S ++T+IP+    AAP D A  S  
Sbjct: 180 LAASVTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTP 239

Query: 229 GSAIRQPLTLGIDMISSTTLSRSFSIF*LSKYY 131
            S      T      S+T+ S   S +  S +Y
Sbjct: 240 ASTSYASSTTSATSTSTTSGSSGSSDWGRSSFY 272


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 443 LNFIFLLCFQFKNRSGDRAMSLY-EALFIISFKANCGRFHVRLYFT 309
           LN+++L+   F+N SG +  SLY E L ++     C  F+ RL FT
Sbjct: 765 LNYVYLMKALFRNISGGKFDSLYKEILPLLQVMLEC--FN-RLIFT 807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,916
Number of Sequences: 5004
Number of extensions: 61328
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)