Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B12
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0077 + 626126-626137,626222-627421                               30   2.8  
02_02_0541 - 11339269-11339376,11339511-11339580,11339679-113398...    29   4.9  

>06_01_0077 + 626126-626137,626222-627421
          Length = 403

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 676 STFCDW*VIL*LNFEIKIYINKYSNLCYFGGQLKVNNNFNLFPITRHNLLRDVKLTYFWL 497
           S+  DW V      E+K+ +N+   +  F GQL     ++L+ +    +LR  K+   W 
Sbjct: 199 SSLFDWPVGSDSWSELKLPVNRVDQIVEFNGQLIAVIEYSLYTLQLAPILRLEKIKTLWW 258

Query: 496 NN 491
           +N
Sbjct: 259 DN 260


>02_02_0541 -
           11339269-11339376,11339511-11339580,11339679-11339869,
           11341063-11341158,11342444-11342550,11343468-11343510,
           11343591-11343680,11343943-11344005
          Length = 255

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 DSAGIIVAISEQACKIQPNMKPPTVCLETDNKQC 371
           +S GI+ ++ ++   + P + PPT+ L   N+ C
Sbjct: 11  NSFGIVASLLQEIIVVYPALSPPTLSLGASNRVC 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,606
Number of Sequences: 37544
Number of extensions: 346245
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)