Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B12
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   5.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   7.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   7.7  

>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
            C44B9.4 protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 406  IAPVIVPCRCMRHCLLSVSRQTVGGFMFGC 317
            I P  + CRC +H  L +SRQ   G +  C
Sbjct: 1098 IIPPHIKCRCQKHSDLQISRQESTGELVRC 1127


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 156 ENDLDKVVEEIMSMPKVNGCLIADPQGLCLASKGAAHVDSA--GIIVAISEQACKIQPNM 329
           + DL K +    S+ ++NG L  DP  L L  K    ++    G I   +++   +QP++
Sbjct: 520 DGDLVKAIATCHSLTRINGVLHGDPLDLILFQKTGWTMEEGIEGDIEEETQRFDNVQPSI 579

Query: 330 KPPT 341
             PT
Sbjct: 580 IKPT 583


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 379  CMRHCLL---SVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPC 230
            C+R+ L+   S+S +  G    GC++     + +I PAESTC   ++     C
Sbjct: 1709 CIRNVLVDGRSISVKKKGKTRAGCVVPNRCSVDSICPAESTCHRAWNKHKCKC 1761


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 370  HCLLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 209
            HC   VSR+T   F F C    C     +   ++ C    D   S C SA   P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 370  HCLLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 209
            HC   VSR+T   F F C    C     +   ++ C    D   S C SA   P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,532,447
Number of Sequences: 27780
Number of extensions: 344766
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)