Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B11
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    28   2.0  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.7  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   6.2  
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    26   8.2  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   8.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   8.2  

>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 372 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDD 533
           RKV + L +K +ID N +   +   EA++Q     +     A+S  +I + I++
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEE 163


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 204 LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV- 380
           +L+N+ + KL  +   VD   D TE+     +  +L++  L     +   +L+K  R + 
Sbjct: 92  ILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILEKYLRFLN 151

Query: 381 --ARQLSDKSII 410
              ++LSDK  +
Sbjct: 152 PDLQELSDKKAV 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 324  LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 440
            LK+T     +LLKK+  +  + +   SI+ Y  +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 870 IPKSATPGSAATLPL 826
           +PK+ TP  AATLPL
Sbjct: 110 VPKNITPSQAATLPL 124


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 299
           ++  N      +E WK  D+DED+  +  EP +
Sbjct: 42  VVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKL 74


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 390 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLGFSY 569
           L+D ++ DY   + N  NN  N QQ   V+ +    V +      +   + S+  +  S 
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSV-LMNSSS 264

Query: 570 KHP*RNRK-PDVVQCSISTGELSFDD 644
            H   N + P  +  ++ +G ++FD+
Sbjct: 265 AHQSNNLEFPSSISGNVESGNVAFDE 290


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +3

Query: 315 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 479
           ALD   KK    +  LLK+++ K       K   +++   R ++   A    D ++  + 
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674

Query: 480 GQIISAVSIEEICREIDDIFK 542
           G+    +S   I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,139
Number of Sequences: 5004
Number of extensions: 45363
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)