Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B11
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    31   1.1  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   5.8  
Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate recep...    28   7.7  
AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic gl...    28   7.7  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/66 (36%), Positives = 33/66 (50%)
 Frame = +3

Query: 252 VDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIR 431
           VD DE+ TEE+ E   TT  S      TT   A   KKV  +   +LS+K     + F+R
Sbjct: 521 VDDDEEGTEEEEEEVSTTEKSTTTTTTTT--EASKSKKVNMERFWRLSNKP-SGKSPFLR 577

Query: 432 NLQNNE 449
           + Q N+
Sbjct: 578 HSQGNK 583


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/66 (36%), Positives = 33/66 (50%)
 Frame = +3

Query: 252 VDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIR 431
           VD DE+ TEE+ E   TT  S      TT   A   KKV  +   +LS+K     + F+R
Sbjct: 521 VDDDEEGTEEEEEEVSTTEKSTTTTTTTT--EASKSKKVNMERFWRLSNKP-SGKSPFLR 577

Query: 432 NLQNNE 449
           + Q N+
Sbjct: 578 HSQGNK 583


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
 Frame = +3

Query: 210 RNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQL--LKKVRRKVA 383
           +NEQ  +LEE  +   ++ DR   ++E A+ TM      + T   S  L  LK+   K  
Sbjct: 66  QNEQEARLEELRRSAKIENDRKNREDELAIETMKFENSQRNTEVYSPYLDSLKEKSLKQD 125

Query: 384 RQLSDKSIIDYNDFI-RNLQNNEANDQQFFFVNGQIISAVSIEEICREIDD 533
            Q  +  I   N+ + R L+  +A ++    +  Q I     EE C+++++
Sbjct: 126 EQFRNNKIRFKNEEMDRTLKYQQAQEEH--TLRRQKIDE-EFEEKCQKLNE 173


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 204  LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 299
            L++++ W++L E WK V     + EED EP +
Sbjct: 3308 LIKDKSWLELSERWKTV-----QDEEDQEPVL 3334


>Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical
           protein R04D3.2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 261 DEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 440
           +ED  E++++P MT   S  + +   FD     K  R   AR+ ++K+  D  D    ++
Sbjct: 312 NEDNEEDESKPRMTNRRSRNEDEDDFFDDEDDSKPQRNPKARRGNEKN-FDNADSYDEVE 370

Query: 441 NNEAND 458
           N++  D
Sbjct: 371 NDDDYD 376


>U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 8 protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 285 NEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN 455
           N+  +   LS + L K +  S     K+R  V R  + K I DY  ++   + NE N
Sbjct: 323 NDGILPVYLS-IPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECN 378


>AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-8 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 285 NEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN 455
           N+  +   LS + L K +  S     K+R  V R  + K I DY  ++   + NE N
Sbjct: 315 NDGILPVYLS-IPLVKNSIYSPYFSTKIREMVERGFTQKWIADYRSYVAMQKINECN 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,395
Number of Sequences: 27780
Number of extensions: 261451
Number of successful extensions: 926
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)