Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B11
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   2.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   2.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   2.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   2.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 314
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 314
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 314
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 RNEQ-WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 314
           +NE  + K  E WK    D    E   EP + + LS
Sbjct: 51  KNENSYRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 338 CSFLQVQSAEHCRHSRFVVFLCP 270
           C  + VQS   C   R   +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 240 LLRVSSIARYGAGWFPXLVVLYPF*R*HVNXVTTRP 133
           LLR+S + RY + W    + LY     H     T P
Sbjct: 219 LLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPP 254


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 381 ARQLSDKSIIDYNDFIRNLQNN 446
           A++L D  + +YN  IR + NN
Sbjct: 21  AKRLYDDLLSNYNRLIRPVSNN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,927
Number of Sequences: 438
Number of extensions: 3436
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)