Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B10
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   4.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.7  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   7.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   7.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   7.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 129 FNLSLILLLCKFHYISLFIFIGSMKLL 49
           F + L+ LLC +H+   FI I +M LL
Sbjct: 156 FTVHLLFLLCIYHFFCAFI-IFTMHLL 181


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 431 DPSWVALEPGAALPPQG 381
           +P+   ++PG ALPP G
Sbjct: 152 EPNPSIIDPGPALPPAG 168


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 431 DPSWVALEPGAALPPQG 381
           +P+   ++PG ALPP G
Sbjct: 152 EPNPSIIDPGPALPPTG 168


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 44   ILSSFIEPIKINKDI**NLHNKSIKLRLKSNQFLHMFDKMAYRCVLIILL 193
            +L  ++ PI  NK+    +  + I+LR KS     MF+ +    V ++ L
Sbjct: 1239 LLDKYLYPIDENKEEKARIAKELIELRNKSVFAFFMFNALFVLVVFLLQL 1288


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 44   ILSSFIEPIKINKDI**NLHNKSIKLRLKSNQFLHMFDKMAYRCVLIILL 193
            +L  ++ PI  NK+    +  + I+LR KS     MF+ +    V ++ L
Sbjct: 1239 LLDKYLYPIDENKEEKARIAKELIELRNKSVFAFFMFNALFVLVVFLLQL 1288


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 76  YFYRFNETAKNQILRIPYS 20
           Y  RF+    N IL++PYS
Sbjct: 107 YQPRFHLVRANDILKLPYS 125


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 76  YFYRFNETAKNQILRIPYS 20
           Y  RF+    N IL++PYS
Sbjct: 98  YQPRFHLVRANDILKLPYS 116


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 723 VXRIRRSTPRCTSSWCSRLCGKKDANRD 806
           V RI      C + W  + C  KD++ D
Sbjct: 122 VDRIADFECNCKNGWKGKTCSLKDSHCD 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,656
Number of Sequences: 336
Number of extensions: 3722
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)