Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B10
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   2.8  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   6.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   6.4  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   6.4  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   8.4  

>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 141 NWFDFNLSLILLLCKFHYISLFI 73
           +W DF L  ++L C F Y+  FI
Sbjct: 45  DWRDFRLEFVILACFFLYVFSFI 67


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 380 SPEEAKRRLALMLPKMDLNNDQNIDRIELKKWILNSFVKL 499
           S ++  R L   LPK+++NND+     E+ K + N  V L
Sbjct: 11  STQDVVRCLCDNLPKLEINNDKKKSFEEVSKCLQNLRVSL 50


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 645 CYKKRKRCGXVADKNGDGKLNLDEFEVXRIRRSTPRCTSSWCSRLCGKK 791
           CY++  RCG + +K    K +  E    ++      C SS C + CGK+
Sbjct: 691 CYRENVRCGELCNKLLSCKTHFCE----KLCHPDGECESS-CKKECGKR 734


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 731 NPEEHSEMHEFLVQQAXREKGR 796
           NP E  ++HEF+ +Q    +GR
Sbjct: 299 NPSEREQVHEFIKEQVRIARGR 320


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 575 LQDAFGVDTEEEVGPEDTGDSGMLLQEEK 661
           L D F  +   E+ PED  D  + L+EE+
Sbjct: 359 LNDGFNTNNAAEINPEDDEDVEIELREEE 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,777
Number of Sequences: 5004
Number of extensions: 59212
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)