Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B10
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18... 32 0.72
07_03_0970 - 23034521-23034928,23036173-23037081 30 2.2
06_01_0920 + 7098007-7098065,7098538-7099345 30 2.9
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 29 3.8
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 5.1
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257... 29 5.1
03_06_0181 - 32180321-32180491,32180849-32181010 28 8.8
>02_01_0031 -
187798-187887,187996-188179,188468-188640,188917-189399,
189557-190213,190821-190837,191501-192041
Length = 714
Score = 31.9 bits (69), Expect = 0.72
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +2
Query: 365 EFDR-LSPEEAKRRLALMLPKMDLNNDQNIDRIELKKWILNSFVKLXXXXXXXXXXXXXX 541
EFD+ L+ A+ + L + D I+ + ++ LN
Sbjct: 209 EFDQNLNVAAARALMQTGLRSCPESEDMWIEYLRMELTYLNKLKARKVALGEDVKTLQKK 268
Query: 542 NRDGSVTWSEYLQDAFGVDTEEEVGPEDTGDSGMLLQ-EEKAMW 670
N D S TW E ++ F E++ GP+++G G+ L+ +E W
Sbjct: 269 NNDAS-TWKEENKELFMSLNEQDEGPKESGSQGVALEGKEDLFW 311
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 299 GDSGHNTEFDHEAILGSVKESEEFDRLSPEEAKRRLALMLPKMDLNNDQNIDRIELKKWI 478
G +G T D EA+L + +E D L E RRL ++ + L + + DR+ K++
Sbjct: 95 GLAGKKTAQD-EALLSEERRIDELD-LPRHEVVRRLRILREPVTLFGEDDADRLARLKFV 152
Query: 479 LNSFV 493
L S V
Sbjct: 153 LKSGV 157
>06_01_0920 + 7098007-7098065,7098538-7099345
Length = 288
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 214 REIQIIKQKNN*NTSVGHLIKHMQELVRF*SQLNTFVMQISLYILVYFYRFNETAKNQI 38
R +Q+ K K N+SV HL H E ++ N +Y+ + F+RF KNQ+
Sbjct: 30 RTLQLWKVKERRNSSVLHLQLHDSEFLQISQTCNCNY----IYMTLNFFRFCNLEKNQV 84
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 212 SSAAAHGH-SVDNLER--ESDGSYRSRDHEHYGDSGHNTEFDHEAILGSVKESEEFDRLS 382
SS A+ GH SV +L D + RD + G N H+ L KES E D S
Sbjct: 1156 SSIASKGHLSVSDLLDYISPDQERKERDTQRKGRRAKNNIRAHQGELVEEKESFEHDIGS 1215
Query: 383 PEEAKR 400
P EA +
Sbjct: 1216 PHEANK 1221
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 729 RIRRSTPRCTSSWCSRLCGK 788
RIRRSTP +SSW R C +
Sbjct: 189 RIRRSTPPSSSSWWRRHCNR 208
>08_01_0306 -
2570411-2570419,2570809-2570886,2571464-2571671,
2573400-2573521,2573815-2573883,2573963-2574052,
2574113-2574230,2574956-2575086,2575195-2575464,
2577323-2577433,2577604-2578152
Length = 584
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 741 SSGFXTPQIHQDSISRRRSYRRPDHIAF--SSCNSMPE 634
+SGF + DSI+ R RR D I F S C+++P+
Sbjct: 386 TSGFIVNLVKVDSIAERLGIRRGDVIVFQDSCCSTLPQ 423
>03_06_0181 - 32180321-32180491,32180849-32181010
Length = 110
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 696 GKLNLDEFEVXRIRRSTPRCTSSWCSRLCGKKDANRDSXYPF 821
G L F +RR +P S+CS CG+ D Y F
Sbjct: 18 GHRQLQLFHGEGLRRLSPASYQSFCSSACGQVDTTIKDQYRF 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,008,205
Number of Sequences: 37544
Number of extensions: 418469
Number of successful extensions: 1300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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