Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B09
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    29   0.90 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    27   3.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   4.8  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +3

Query: 483 SKRPGTVKRPRCWRF--SIGS--APLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCAL 650
           S+ P T+ RP  +R   S+G+  +PL S +++D      E+  D  +T      +P+ A 
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 651 PVPTLPLTGYLS 686
           P P+   TG L+
Sbjct: 376 PPPSRRKTGGLN 387


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 580 EVAKPDRTI-KIPGVSPWKLPRALSLFRPCRLPDTCPPFSLREAWRFLIAH 729
           ++ + D+ + K+  V+P  + +AL LF    + ++C    L +A R  ++H
Sbjct: 31  KIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 546 LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALPVPTLPLT 674
           +  ++++   + GGE   +  DT   PLE    ALP+   PLT
Sbjct: 174 IDQLSRLVEILEGGEISSEILDTL-LPLEIEDLALPLSLYPLT 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,102
Number of Sequences: 5004
Number of extensions: 64779
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)