Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B09
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           35   0.077
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    29   6.7  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.7  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
01_06_0289 + 28233327-28233815                                         28   8.8  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 719 RKRHASRREKGGQVSGKRQGRNRESARGSFQGETPG 612
           R R   RR  GG+V+G+   R+R   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 678 YLSAFLPSGSVALSHSSRCRYLSSGVGRSLQAG 776
           Y S   P  SV L HSS C +  S V   L+AG
Sbjct: 139 YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 150 HCILVVVCPNSSMYLIMSGSN*PSAKGRSAAAVP 49
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 633 APSCALPVPTLPLTGYLSAFLPS 701
           +P   LP+P  P +GYLS  LPS
Sbjct: 243 SPKSHLPIPKFPPSGYLSQPLPS 265


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 296 NESAN---ARGEAVCVLGALPLPRSLTRCAR 379
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_06_0289 + 28233327-28233815
          Length = 162

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 719 RKRHASRREKGGQVSGKRQ-GRNRESARG 636
           R+RHA RR KGG  SG    G  R  ARG
Sbjct: 123 RRRHARRRSKGGGGSGDGDCGGLRGGARG 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,046,363
Number of Sequences: 37544
Number of extensions: 531371
Number of successful extensions: 1702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)