Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B09
(899 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 31 4.3
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 31 4.3
AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens ... 31 5.7
AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.5
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.5
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein. 31 7.5
AF174600-1|AAF04521.1| 255|Homo sapiens F-box protein Fbx20 pro... 31 7.5
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 30 10.0
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 30 10.0
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 30 10.0
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 31.5 bits (68), Expect = 4.3
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -1
Query: 683 QVSGKRQGRNRESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPF 504
++ G +G + S+ G++P + GFA+ + +F +A GG + +P + P
Sbjct: 574 RLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPS 633
Query: 503 YGSWP 489
Y S P
Sbjct: 634 YLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 31.5 bits (68), Expect = 4.3
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -1
Query: 683 QVSGKRQGRNRESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPF 504
++ G +G + S+ G++P + GFA+ + +F +A GG + +P + P
Sbjct: 575 RLKGLGEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYSTPS 634
Query: 503 YGSWP 489
Y S P
Sbjct: 635 YLSVP 639
>AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ35392 fis, clone SKNSH2000716. ).
Length = 149
Score = 31.1 bits (67), Expect = 5.7
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -1
Query: 551 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 435
RQ G G A R F S P GLL CS LR PDSV
Sbjct: 69 RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106
>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 592 PDRTIKIPGVSPWKLPRALSLFRPCRLPDTCPPFSLREAWRFLI 723
PDR +P PW LP + C L TCP + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253
>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 592 PDRTIKIPGVSPWKLPRALSLFRPCRLPDTCPPFSLREAWRFLI 723
PDR +P PW LP + C L TCP + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253
>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
Length = 1055
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 592 PDRTIKIPGVSPWKLPRALSLFRPCRLPDTCPPFSLREAWRFLI 723
PDR +P PW LP + C L TCP + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253
>AF174600-1|AAF04521.1| 255|Homo sapiens F-box protein Fbx20
protein.
Length = 255
Score = 30.7 bits (66), Expect = 7.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 592 PDRTIKIPGVSPWKLPRALSLFRPCRLPDTCPPFSLREAWRFLI 723
PDR +P PW LP + C L TCP + R L+
Sbjct: 84 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 127
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 695 EKGGQVSGKRQGRNRESARGS 633
EKG +VSGKR+GRN +A S
Sbjct: 3 EKGPEVSGKRRGRNNAAASAS 23
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 695 EKGGQVSGKRQGRNRESARGS 633
EKG +VSGKR+GRN +A S
Sbjct: 3 EKGPEVSGKRRGRNNAAASAS 23
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 30.3 bits (65), Expect = 10.0
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 695 EKGGQVSGKRQGRNRESARGS 633
EKG +VSGKR+GRN +A S
Sbjct: 3 EKGPEVSGKRRGRNNAAASAS 23
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,117,209
Number of Sequences: 237096
Number of extensions: 2779757
Number of successful extensions: 12467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12458
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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