Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B08
         (936 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    45   0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.21 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.48 
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   2.6  
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    35   3.4  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 37/92 (40%), Positives = 42/92 (45%)
 Frame = +1

Query: 526 RGEAVCVLGALPXPRSLTXCARSXGCGXRXQLTQRR*XGYPXNSGXXPGKNXXTXRPXKS 705
           R   +C  G +P PRSLT  ARS GCG R +LT               G      R   S
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD------------GDGNFLEDTRKTLS 73

Query: 706 PXXVKXPXCWRXSIGSAPLTSITKIXXQXXGG 801
              ++ P   R SIGSAPLTSI K   Q  GG
Sbjct: 74  KEEIR-PRRSRFSIGSAPLTSIAKSDAQISGG 104


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +1

Query: 502 CINESAXARGEAVCVLGALPXPRSLTXCARSXGCG 606
           CI + A AR EAV VL ALP  RS T C RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 428 INKLTTTIAFILCFRFRGEVWEVFSALMNRPXRGERRFAYW 550
           +++LT      L  RF      V +ALMNRP RGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -2

Query: 554 APNTQTASPRAXADSLMQ 501
           APNTQTASPRA ADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 17/22 (77%), Positives = 17/22 (77%)
 Frame = +1

Query: 736 RXSIGSAPLTSITKIXXQXXGG 801
           R SIGSAPLTSITKI  Q  GG
Sbjct: 15  RFSIGSAPLTSITKIDAQVRGG 36


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 18/29 (62%), Positives = 19/29 (65%)
 Frame = +1

Query: 715 VKXPXCWRXSIGSAPLTSITKIXXQXXGG 801
           V+ P   R SIGSAPLTSITK   Q  GG
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGG 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,137,695
Number of Sequences: 1657284
Number of extensions: 7653751
Number of successful extensions: 13993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13989
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)