Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B07
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    34   0.024
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.88 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   4.7  
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    27   4.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.7  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    27   4.7  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
 Frame = +2

Query: 269 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLF-SMFRENVAVYFYVFIGVL 445
           M+I +  +   L  EI   +++ LP+  P +  +   + +  S F   V     + I  +
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPL--PLKVRRAILNAISNSPFAGRVKHVLKITIICI 58

Query: 446 ALFLIDAVREIRKYSNVTDVSHTHLATEMKTH----VKLFRAQRNFYIIGFAIFLTFVIR 613
            +   D+VR + + +   D++    +T            F AQRN Y+ G A+FL+ V+ 
Sbjct: 59  LILFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVN 118

Query: 614 R 616
           R
Sbjct: 119 R 119


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 302 LYFEIALVMLMILPIFSPRRWNQFFK 379
           L + I L +L+I+P+F PR W+   K
Sbjct: 159 LAYNITLFLLVIIPLFFPRAWSPTVK 184


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 272  SIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSR 385
            SIQ  FI G + +   L +L+I+P+F    +N+ +  R
Sbjct: 1029 SIQVLFILGVICYSAPLSLLLIVPLFFLYLYNRAYYVR 1066


>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 LYFEIALVMLMILPIFSPRRWNQFFKSRLFS 394
           +YF  A+V   + P+     WN ++K++L S
Sbjct: 64  VYFGYAMVQKRVFPMVMSVGWNPYYKNKLRS 94


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 359 RWNQFFKSRLFSMFRENVAVYFYVFIGVLALFL-IDAVREI 478
           RW++FF+    ++    + + + V +G +A+F+ +D +R +
Sbjct: 436 RWHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRL 476


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +2

Query: 410 VAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFY 574
           VA+   + +GV ++ L +   ++    + T +  T LAT+++T  +LFR + N Y
Sbjct: 20  VAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLY 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,498
Number of Sequences: 5004
Number of extensions: 49166
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)