Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B07
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.     107   1e-23
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...   107   1e-23
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    29   4.4  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score =  107 bits (256), Expect = 1e-23
 Identities = 50/121 (41%), Positives = 74/121 (61%)
 Frame = +2

Query: 269 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 448
           M++QWT +AG LY EIA+   ++LP   P  W++ FKSRLF+   ++  +Y   F  VL 
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 449 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 628
           +   D VRE  KY+ +         ++   H++LFRAQRN YI GFA+ L  VI+R++T+
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 629 L 631
           L
Sbjct: 121 L 121


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score =  107 bits (256), Expect = 1e-23
 Identities = 50/121 (41%), Positives = 74/121 (61%)
 Frame = +2

Query: 269 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 448
           M++QWT +AG LY EIA+   ++LP   P  W++ FKSRLF+   ++  +Y   F  VL 
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 449 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 628
           +   D VRE  KY+ +         ++   H++LFRAQRN YI GFA+ L  VI+R++T+
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 629 L 631
           L
Sbjct: 121 L 121


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta
           family protein 6 protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 299 YLYFEIALVMLMILPIFSPRRWNQFFKSRLFS-MFRENVAVYFYVFIGVLALFLIDAVRE 475
           +L  ++A +  ++     P RW+ FF    FS    +    +FY+ + +LA+      R+
Sbjct: 100 FLTNKMAHIFSLVFAADFPERWSSFFNDLFFSDNINDRKVAFFYLKV-LLAIDTEVVNRD 158

Query: 476 IRKYSNVTD 502
           I++  N +D
Sbjct: 159 IQRSKNESD 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,684
Number of Sequences: 27780
Number of extensions: 269307
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)