Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 513 PPPPGXXGXXFXXPPPXPPXKKGG 584
           PPPPG  G     PPP PP    G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 513 PPPPGXXGXXFXXPPPXPP 569
           PPPP   G     PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPP 474
           GGP   PP P   G        PPPPP
Sbjct: 759 GGPPPPPPPPGVAG--AGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 512 PPPPXGXGAXXXXPPPXXP 568
           PPPP G       PPP  P
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 548 PKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPA 438
           P   PP P   G     +  PPPPP   KK+    PA
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPA 42



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 548 PKXXPPXPXGGGXFXXXKKXPPPPPRXXKKK 456
           P   PP P     F    + PPPPP    KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,740
Number of Sequences: 5004
Number of extensions: 14891
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)