Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B06
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 33 0.28
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 33 0.28
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.49
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.49
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.49
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.85
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 0.85
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.5
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 6.0
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 6.0
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 6.0
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 6.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.0
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 6.0
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 25 6.8
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 25 7.2
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGG-GXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GGG P P GG G F PPP P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPP 697
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
G GG P PP P G PPPPP
Sbjct: 668 GLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 516 PPPGXXGXXFXXPPPXPP 569
PPPG G PPP PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGG-GXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GGG P P GG G F PPP P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPP 697
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
G GG P PP P G PPPPP
Sbjct: 668 GLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 516 PPPGXXGXXFXXPPPXPP 569
PPPG G PPP PP
Sbjct: 664 PPPGGLGGFMPPPPPPPP 681
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
GGP PP P GG PPPPP G P PP
Sbjct: 724 GGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/61 (36%), Positives = 22/61 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLFXK 375
GGP PP P G PPPPP K G P PP G P L K
Sbjct: 756 GGPPPPPPPPGG-----CPPPPPPPPPGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 807
Query: 374 K 372
K
Sbjct: 808 K 808
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLF 381
GGP PP P GG PPPPP P PP G PP +F
Sbjct: 740 GGP---PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPGMF 793
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKKGGXXXXXXXXXXXXXXXXXXXPPXPG 656
PPPPG PPP PP GG PP PG
Sbjct: 745 PPPPGGLPPISGGPPPPPP-PPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 557 GGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
GG P PP P GG K PPPPP
Sbjct: 766 GGCPPPPPPPPPGG-----FKGGPPPPP 788
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
GGP P P G PPPPP G P PP G PP
Sbjct: 711 GGPPPPPGLPPITGG-----PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
GGP PP P GG PPPPP G P PP
Sbjct: 724 GGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/61 (36%), Positives = 22/61 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLFXK 375
GGP PP P G PPPPP K G P PP G P L K
Sbjct: 756 GGPPPPPPPPGG-----CPPPPPPPPPGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 807
Query: 374 K 372
K
Sbjct: 808 K 808
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLF 381
GGP PP P GG PPPPP P PP G PP +F
Sbjct: 740 GGP---PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPGMF 793
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKKGGXXXXXXXXXXXXXXXXXXXPPXPG 656
PPPPG PPP PP GG PP PG
Sbjct: 745 PPPPGGLPPISGGPPPPPP-PPGGCPPPPPPPPPGGFKGGPPPPPPPG 791
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 557 GGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
GG P PP P GG K PPPPP
Sbjct: 766 GGCPPPPPPPPPGG-----FKGGPPPPP 788
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
GGP P P G PPPPP G P PP G PP
Sbjct: 711 GGPPPPPGLPPITGG-----PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
GGP PP P GG PPPPP G P PP
Sbjct: 307 GGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/61 (36%), Positives = 22/61 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLFXK 375
GGP PP P G PPPPP K G P PP G P L K
Sbjct: 339 GGPPPPPPPPGG-----CPPPPPPPPPGGFK---GGPPPPPPPGMFAPMAPVIPDYLPPK 390
Query: 374 K 372
K
Sbjct: 391 K 391
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPPXLF 381
GGP PP P GG PPPPP P PP G PP +F
Sbjct: 323 GGP---PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG-GFKGGPPPPPPPGMF 376
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKKGGXXXXXXXXXXXXXXXXXXXPPXPG 656
PPPPG PPP PP GG PP PG
Sbjct: 328 PPPPGGLPPISGGPPPPPP-PPGGCPPPPPPPPPGGFKGGPPPPPPPG 374
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 557 GGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
GG P PP P GG K PPPPP
Sbjct: 349 GGCPPPPPPPPPGG-----FKGGPPPPP 371
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 554 GGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
GGP P P G PPPPP G P PP G PP
Sbjct: 294 GGPPPPPGLPPITGG-----PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
G GGGG GGG + PPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGGGXFXXXKKXPPPPP 474
G GGGG GGG + PPPPP
Sbjct: 276 GGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.5 bits (68), Expect = 0.85
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -3
Query: 536 PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
PP P ++ PPPPP P PP LG K P
Sbjct: 68 PPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPPILGLKTPSKSLKTP 116
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKKGG 584
PPPP G + PPP PP G
Sbjct: 41 PPPPPPCGGGYEAPPPPPPPSYAG 64
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKKGG 584
PPPP G PPP PP GG
Sbjct: 42 PPPPPCGGGYEAPPPPPPPSYAGG 65
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 513 PPPPGXXGXXFXXPPPXPPXKK 578
P PPG G PPP PP +K
Sbjct: 134 PGPPGRDGALLPGPPPKPPCQK 155
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 536 PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLG 423
PP P GG PPPPP G PP G
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -3
Query: 560 GGGGPKXXPPXPXGGGXFXXXKKXPPPPP--RXXKKKXXGXPAPPXLG 423
G G P PP P G PPPPP G P PP G
Sbjct: 251 GSGSP---PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 536 PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLG 423
PP P GG PPPPP G PP G
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -3
Query: 560 GGGGPKXXPPXPXGGGXFXXXKKXPPPPP--RXXKKKXXGXPAPPXLG 423
G G P PP P G PPPPP G P PP G
Sbjct: 272 GSGSP---PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 536 PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLG 423
PP P GG PPPPP G PP G
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -3
Query: 560 GGGGPKXXPPXPXGGGXFXXXKKXPPPPP--RXXKKKXXGXPAPPXLG 423
G G P PP P G PPPPP G P PP G
Sbjct: 257 GSGSP---PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -3
Query: 566 GXGGGGPKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G G G PP P GG PPPP + G P PP
Sbjct: 761 GRGAGPMSSFPPPPRGG-----MHHMPPPPSFRGGRGGHGGPPPP 800
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -3
Query: 548 PKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
P PP G PPPP R G P PP G PP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 GGGGPKXX--PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GPK PP P GGG F PP P G P PP
Sbjct: 344 GRDGPKGNSGPPGPPGGGTFNDGAPGPPGLP-----GRPGNPGPP 383
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 GGGGPKXX--PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GPK PP P GGG F PP P G P PP
Sbjct: 343 GRDGPKGNSGPPGPPGGGTFNDGAPGPPGLP-----GRPGNPGPP 382
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 GGGGPKXX--PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GPK PP P GGG F PP P G P PP
Sbjct: 343 GRDGPKGNSGPPGPPGGGTFNDGAPGPPGLP-----GRPGNPGPP 382
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 GGGGPKXX--PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GPK PP P GGG F PP P G P PP
Sbjct: 344 GRDGPKGNSGPPGPPGGGTFNDGAPGPPGLP-----GRPGNPGPP 383
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -3
Query: 548 PKXXPPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPPXLGXXXXXKKXXPP 390
P PP G PPPP R G P PP G PP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 560 GGGGPKXX--PPXPXGGGXFXXXKKXPPPPPRXXKKKXXGXPAPP 432
G GPK PP P GGG F PP P G P PP
Sbjct: 380 GRDGPKGNSGPPGPPGGGTFNDGAPGPPGLP-----GRPGNPGPP 419
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 25.0 bits (52), Expect(2) = 6.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 613 PPPXXGGXXXPXXPGXP 663
PPP GG P PG P
Sbjct: 481 PPPGQGGPGGPGGPGGP 497
Score = 21.8 bits (44), Expect(2) = 6.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 433 GGAGXPXXFFFXXRGGGGGXFFXXKXXPPPXGXGG 537
GG G P F + G F PP G GG
Sbjct: 408 GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGG 442
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 25.0 bits (52), Expect(2) = 7.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 613 PPPXXGGXXXPXXPGXP 663
PPP GG P PG P
Sbjct: 201 PPPGQGGPGGPGGPGGP 217
Score = 21.8 bits (44), Expect(2) = 7.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 433 GGAGXPXXFFFXXRGGGGGXFFXXKXXPPPXGXGG 537
GG G P F + G F PP G GG
Sbjct: 128 GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGG 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,729
Number of Sequences: 27780
Number of extensions: 201812
Number of successful extensions: 1532
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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