Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B05
         (887 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 604 ARTHAGPRRTHSARHRAPPADRVRSRAP 521
           A T  G  +TH   HRA P  RV  + P
Sbjct: 171 AFTTKGNLKTHMGVHRAKPPMRVLHQCP 198


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 610 PSARTHAGPRRTHSARHRAP 551
           P+   H GP  TH A   +P
Sbjct: 48  PAGNAHTGPTGTHDAGFPSP 67


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 685 VVEGTRRYDEPPYDDRHYDERAQYERPRPAHHI 783
           +++G +    PP D   +++ A Y      HH+
Sbjct: 424 MMDGQQMMHRPPGDPAFHNQYAHYPAEYYGHHL 456


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 259 CDIMNRCGFVHMQTE 303
           C +MNRC F    T+
Sbjct: 738 CTLMNRCKFSEFMTK 752


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,226
Number of Sequences: 336
Number of extensions: 3565
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)