Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B04
         (1044 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.038
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   0.24 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   0.95 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   2.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.038
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 441 PPPPPPPPXXXKKTFPFXFXXAXXKXXPPPLXXPPXFXXPPP 316
           PPPPPPP      + P           PPP   P     PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -1

Query: 438 PPPPPPPXXXKKTFPFXFXXAXXKXXPPPLXXP---PXFXXPPPPQ 310
           PPPPPPP    +  P     +     PPP   P        P PPQ
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ 356


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 462 PXFKXXXPPPPPPPPXXXKK 403
           P F+    PPPPPPP   KK
Sbjct: 16  PGFEPPSQPPPPPPPGYVKK 35



 Score = 26.6 bits (56), Expect(2) = 0.063
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.0 bits (52), Expect(2) = 0.063
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 360 PPPLXXPPXFXXPPPPQXF 304
           PPP   PP    PPPP  +
Sbjct: 14  PPPGFEPPSQPPPPPPPGY 32


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
 Frame = -1

Query: 441 PPPPPPP---PXXXKKTFPFXFXXAXXKXXPPPLXXPPXF--XXPPPP 313
           PPPPPP    P       P     A     PPP   PP      PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 462 PXFKXXXPPPPPPPP 418
           P      PPPPPPPP
Sbjct: 768 PGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect(2) = 0.24
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 23.0 bits (47), Expect(2) = 0.24
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 465 APXFKXXXPPPPPP 424
           AP      PPPPPP
Sbjct: 755 APIMGGPPPPPPPP 768


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect(2) = 0.95
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 465 APXFKXXXPPPPPPP 421
           +P F     PPPPPP
Sbjct: 231 SPIFSSSSTPPPPPP 245



 Score = 23.0 bits (47), Expect(2) = 0.95
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPP P
Sbjct: 240 PPPPPPRP 247


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
 Frame = -1

Query: 441  PPPPPPPPXXXK---KTFPFXFXXAXXKXXPPPLXXPPXFXXPPPP 313
            P PPPPPP   K    TF                   P F  PPPP
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPP 950



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 441  PPPPPPPPXXXKK 403
            PPPPPPPP   +K
Sbjct: 1095 PPPPPPPPAEVEK 1107



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 441  PPPPPPPPXXXKK 403
            PPPPPPP    KK
Sbjct: 1096 PPPPPPPAEVEKK 1108


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
 Frame = -1

Query: 441 PPPPPPPPXXXKKTF----PFXFXXAXXKXXP--PPLXXP----PXFXXPPPP 313
           PPPPPPPP    +      P  +  +     P  PP   P    P    PPPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 316 GRGXXKXRGGXKGGGXXFXXGXXKXKRKSFFXXXGGGWGGG 438
           GRG    RGG +GG      G     R  F     GG+GGG
Sbjct: 136 GRGG---RGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 441 PPPPPPPP 418
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,390
Number of Sequences: 5004
Number of extensions: 18494
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)