Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B03
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   308   6e-85
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    75   1e-14
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   2e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   2.1  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    27   4.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   8.5  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  308 bits (757), Expect = 6e-85
 Identities = 144/200 (72%), Positives = 173/200 (86%)
 Frame = +2

Query: 155 SXXQAEXLVXFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGXIVKRTGAIVDVPVGEQIL 334
           S  QAE LV FSSG+KGMALNLE D VG V+FGND+L++EG +VKRT  IVDVPVGE +L
Sbjct: 73  SNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALL 132

Query: 335 GRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 514
           GRVVDALGNPIDGKGPI T  R RV +KAPGI+PR SV EPMQTG+KA+DS+VPIGRGQR
Sbjct: 133 GRVVDALGNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQR 192

Query: 515 ELIIGDRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAG 694
           ELIIGDRQTGKTA+A+DTI+N +R+N   DE KKLYC+YVA+GQKRSTVAQ+V++L +  
Sbjct: 193 ELIIGDRQTGKTAIALDTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEEND 252

Query: 695 AINYTIIVSATASDAAPLQY 754
           ++ Y+IIV+ATAS++APLQY
Sbjct: 253 SLKYSIIVAATASESAPLQY 272


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 42/154 (27%), Positives = 75/154 (48%)
 Frame = +2

Query: 239 VVVFGNDKLIKEGXIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 418
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 419 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 598
           AP    + +  E ++TGIK VD L P  RG +  + G    GKT    + I N  + + G
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGG 226

Query: 599 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI 700
                  Y ++  +G++      + + + + G I
Sbjct: 227 -------YSVFTGVGERTREGNDLYREMQETGVI 253


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 293 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 466
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 467 GIKAVDSLVPIGRGQR 514
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 544 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 425
           TS   ++  L  +  N  QR++SLD+S       HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 365 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 544
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 545 KTALAIDT 568
           K  + +DT
Sbjct: 185 KNGI-LDT 191


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 392 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTI 571
           KS +   +     IP V   +      + V   + +G G   +I+G R +GK+ L +D I
Sbjct: 537 KSTIAARLCGKSHIPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDI 595

Query: 572 INQ 580
           +++
Sbjct: 596 LSR 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,090
Number of Sequences: 5004
Number of extensions: 48164
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)