Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B03
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    52   5e-07
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    47   2e-05
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101...    29   5.1  
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861           29   6.8  
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173     29   6.8  
04_04_0991 - 29969162-29969912,29970097-29970368                       28   9.0  

>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
 Frame = +2

Query: 200 KGMALNLEPDNVGVVVF-GNDKLIKEGXIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 376
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGR+ +  G PID  
Sbjct: 97  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 156

Query: 377 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQR 514
            PI  ++ + +   +     R    E +QTGI  +D +  I RGQ+
Sbjct: 157 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 202


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
 Frame = +2

Query: 200 KGMALNLEPDNVGVVVF-GNDKLIKEGXIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 376
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGRV +  G PID  
Sbjct: 57  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNG 116

Query: 377 GPIDTK-----SRMRVGIKAPG--IIP--RVSVREPMQTGIKAVDSLVPIGRGQR 514
            PI  +     S   +G    G  I P  R    E +QTGI  +D +  I RGQ+
Sbjct: 117 PPILPEAYLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 171


>08_02_1462 +
           27308792-27308924,27309711-27309778,27309854-27310159,
           27310168-27310839
          Length = 392

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 377 GPIDTKSRMR-VGIKAPGI-------IPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGD 532
           GP D + RM+ VGI    +       I    V+EPM  G +    +  +G G   L +GD
Sbjct: 45  GPYDVRVRMKAVGICGSDVHYLREMRIAHFVVKEPMVIGHECAGVIEEVGSGVTHLAVGD 104

Query: 533 R 535
           R
Sbjct: 105 R 105


>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
          Length = 592

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 413 IKAPGIIPRVSVREPMQTGIKAVDSL-VPIGRG 508
           I + G++P +S+R   +TG +  D L  P+GRG
Sbjct: 511 IHSNGVVPSLSLRHAGETGGRGGDGLATPVGRG 543


>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
          Length = 377

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 599 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 706
           EDE + +  +Y+AIG + +T+A  +   TD    NY
Sbjct: 73  EDEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNY 108


>04_04_0991 - 29969162-29969912,29970097-29970368
          Length = 340

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 581 QRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 706
           +R N  +DE++ +  ++ A+G K ST+A  +   TD    NY
Sbjct: 69  RRGNFSDDEERLIIRLHAALGNKWSTIATHLDGRTDNEIKNY 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,888
Number of Sequences: 37544
Number of extensions: 365610
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)