Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B02
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    28   1.6  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   4.8  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 699 PKALKSHQKSLKVPRIFHCXTHKSSIHPEIHLSS 598
           P +  S   SL  P I+   +   SIHP  HLSS
Sbjct: 213 PHSSSSSHNSLHEPVIYDFSSENPSIHPSNHLSS 246


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 555 VIEPIFPFVMR*IATNSNGFLDGWNFCVLXSERYVAPSVTFDVISVLSVAARGHDVXGS 731
           +I P+F      +  +    L G  F VL  + Y    +TFD+I+++  AA G    G+
Sbjct: 80  IIAPVFYSAQAYVLFHHIVLLYGPRFSVLSPKLYGGIFITFDIIALILQAAGGGVAGGA 138


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 336 IEVVGNNCRVEVTNNYGIIHVVGANSLVNINKRWRGDSVQLLGANCRLIVAGKLMSAPSY 515
           + V GNN    VT  + ++    + S    +  WRG    L+     L+   K +SA + 
Sbjct: 60  MHVAGNNSAESVTIKFRLVPGELSLSPAAEDSEWRGQKSSLVFYYPNLLDLLKQLSADAI 119

Query: 516 EAQLSPSSTDLDDV 557
           + Q  P+    D+V
Sbjct: 120 KYQAFPNEKKPDEV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,350
Number of Sequences: 5004
Number of extensions: 50435
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)