Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B02
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...    29   3.8  
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...    29   3.8  
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...    29   3.8  
07_03_0078 - 13147741-13148913                                         29   3.8  
03_04_0243 + 19298293-19299117                                         28   8.8  

>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 VGANSLVNINKRWRGDSVQLLGAN 470
           VG+N L  I K  RGDS+ L+G N
Sbjct: 36  VGSNQLQEIRKGLRGDSIVLMGKN 59


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 VGANSLVNINKRWRGDSVQLLGAN 470
           VG+N L  I K  RGDS+ L+G N
Sbjct: 36  VGSNQLQEIRKGLRGDSIVLMGKN 59


>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 399 VGANSLVNINKRWRGDSVQLLGAN 470
           VG+N L  I K  RGDS+ L+G N
Sbjct: 36  VGSNQLQEIRKGLRGDSIVLMGKN 59


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 401 HNVDDPVVIRHLHPTIVADHLDVAVISTNINDAVVSDYFQ 282
           HN+ D  V+ HL PTI   H   AV +T     ++ +Y+Q
Sbjct: 319 HNITDTHVVHHLFPTIPHYH---AVEATKAIRPILGEYYQ 355


>03_04_0243 + 19298293-19299117
          Length = 274

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -2

Query: 555 RRPGPCWMATVGLRRTGLTSASPQRSAYNSPRGAERCRLSNVC 427
           R PG  W A +       TSA P  S+  SPR   R R S  C
Sbjct: 179 RAPGAAWAAAMAPTSWSRTSAPPASSSPTSPR---RARSSLTC 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,708,401
Number of Sequences: 37544
Number of extensions: 327028
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)