Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B02
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium transp...    31   0.85 
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF038622-3|AAL06048.1|  254|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium
           transporter homolog protein4 protein.
          Length = 558

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = -2

Query: 726 HXHHDLEPQPKALKSHQKSLKVPRIFHCXTHKSSIHPEIHLSSSLFTASRMGKSVQ*RRP 547
           H  HD E  P +  +H K L V R         S+HPE+ L        R G   +  +P
Sbjct: 436 HGWHDFEAAPDSKINHSKHLPVGR----KNRIMSVHPEMSLEQLASVYDRTGSVGESDQP 491

Query: 546 GPCWMATVGLRRTGLTSASPQRSAY 472
              +M     R++ +  A+   + Y
Sbjct: 492 KRLFMNQTERRKSRMIEANALHALY 516


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = -3

Query: 467  RPEELNAVASPTFVDVHKAVCAHNVDDPVVIRHLHPTIVADHLDVAVISTNINDAVVSDY 288
            R  +L  +   T + +  A    ++D   ++RH   T + D     +   N+N  ++ D 
Sbjct: 1232 RASDLVLLNMQTRISIGAAFNTRHLDQKRLLRHRRNTEIFDSYQGEISGVNVNGLMILDL 1291

Query: 287  FQKTRVRLH 261
            ++    R+H
Sbjct: 1292 YENGSNRIH 1300


>AF038622-3|AAL06048.1|  254|Caenorhabditis elegans Hypothetical
           protein R07C12.4 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 270 NSSLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGIIHVVGANS 413
           NS+     G+  +I  + N  ++E+   N   ++ +++GI+HV+ +N+
Sbjct: 49  NSTQFSTCGSIVLILSKRNPNEVEIT--NLVAKIRSHHGIVHVISSNT 94


>Z47072-3|CAI79221.1|  126|Caenorhabditis elegans Hypothetical
           protein F26C11.4 protein.
          Length = 126

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 610 DFWMDGTFVCXTVKDTWHLQ*LLM*FQCFR 699
           +F +DG  +C T  + WHL+     ++ FR
Sbjct: 84  EFQIDGALICNTNSEQWHLEKFSKEYKMFR 113


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 401 HNVDDPVVIRHLHPTIVADHLDVAVISTNINDAVVSDYF----QKTRVRLHCHFSIVTNK 234
           +N  DP+ +      ++   L + +     N A+V  +     +KT + + C F  V+N 
Sbjct: 5   YNYTDPLNLSVAILILIVSWLSIGIFGITCNSAIVYIFLKENSEKTALNIICFFRAVSNI 64

Query: 233 IIVI 222
           II+I
Sbjct: 65  IILI 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,905
Number of Sequences: 27780
Number of extensions: 284888
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)