Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B01
(867 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 101 2e-20
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 99 2e-19
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 91 3e-17
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 87 5e-16
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 79 2e-13
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 54 6e-06
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 49 1e-04
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 49 1e-04
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.047
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.082
UniRef50_Q69XT0 Cluster: Putative uncharacterized protein P0613F... 36 1.0
UniRef50_UPI0000F21822 Cluster: PREDICTED: hypothetical protein;... 35 3.1
UniRef50_UPI00006D02D6 Cluster: hypothetical protein TTHERM_0094... 35 3.1
UniRef50_A4HKW0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_UPI0000E1F625 Cluster: PREDICTED: hypothetical protein;... 34 5.4
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.4
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.4
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_Q7Z6Z7 Cluster: E3 ubiquitin-protein ligase HUWE1; n=36... 33 7.1
UniRef50_UPI0000F1F0D1 Cluster: PREDICTED: similar to ZP1-relate... 33 9.4
UniRef50_Q988C1 Cluster: ABC transporter, permease protein; n=1;... 33 9.4
UniRef50_Q6Z230 Cluster: Putative uncharacterized protein OSJNBb... 33 9.4
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 101 bits (243), Expect = 2e-20
Identities = 48/50 (96%), Positives = 48/50 (96%)
Frame = +3
Query: 525 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPLPL 674
RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP L
Sbjct: 15 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRL 64
Score = 79.4 bits (187), Expect = 1e-13
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = +2
Query: 689 PPFSLREAWRFLIAHAVGISVRCXSFAPSWAVCTN 793
PPFSLREAWRFLIAHAVGISVRC SFAPSWAVCTN
Sbjct: 69 PPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTN 103
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 98.7 bits (235), Expect = 2e-19
Identities = 50/84 (59%), Positives = 58/84 (69%)
Frame = -3
Query: 829 YRIRXTXRAERGVRAHSPAWSERXTPN*DTYSVSYEKAPRFPKGERRXRYPVSGRGRNRR 650
YR + RAERGVRA+SPAWSER P+ DT SVSYEKAPRFPKG++ + +GRNRR
Sbjct: 16 YRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRR 75
Query: 649 AHEGASRGKRLVSL*SCRVSPPLT 578
AHEGA+ K SL PPLT
Sbjct: 76 AHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 91.1 bits (216), Expect = 3e-17
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +3
Query: 525 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 665
RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 51 RFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 87.0 bits (206), Expect = 5e-16
Identities = 41/50 (82%), Positives = 42/50 (84%)
Frame = +3
Query: 525 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPLPL 674
RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P L
Sbjct: 83 RFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGL 132
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 317 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 415
R +C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 78.6 bits (185), Expect = 2e-13
Identities = 42/60 (70%), Positives = 43/60 (71%)
Frame = -3
Query: 559 MLVRGAEPMEKRQQTRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 380
MLVRGAEPMEKR + P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 1 MLVRGAEPMEKRLRCWLL----PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 293 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 460
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 53.6 bits (123), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 829 YRIRXTXRAERGVRAHSPAWSERXTPN 749
YRIR + RAERGVRAHSPAWSER TPN
Sbjct: 16 YRIRRSGRAERGVRAHSPAWSERPTPN 42
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 688 SAFLPSGSVALSHSSRCRYLSSV 756
SAFLPSGSVALSHSSRCRYLSSV
Sbjct: 15 SAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/43 (55%), Positives = 26/43 (60%)
Frame = +2
Query: 665 PAAYRIPXPPFSLREAWRFLIAHAVGISVRCXSFAPSWAVCTN 793
PA RIP PPFSL + + GIS RC SFAPSWAV N
Sbjct: 51 PAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAPSWAVSKN 93
Score = 37.5 bits (83), Expect = 0.44
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = +1
Query: 607 IKIPGVSPWKLPRALSCSDPCRLPDTXSAFLPSGSVALSHSSRCRYLSSVXVVRSKLGCV 786
+KI VS LP ALSCS+P F +GSVALSHSS +
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAPSWAVS 91
Query: 787 HEPPVQP 807
PP P
Sbjct: 92 KNPPFSP 98
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -3
Query: 829 YRIRXTXRAERGVRAHSPAWSERXTPN*DT 740
YRIR + RAERGV A+SPAWSER TP+ DT
Sbjct: 16 YRIRRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +3
Query: 528 FSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 665
F S PLT+ITKI Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 69 FPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 96 DPDMIRYIDEFGQTTTRMQ 152
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 412 HSKAVIRLSTESGDNAGKNM 471
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.047
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 291 SALMNRPTRGERRFAYW 341
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.082
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 363 ERGSGRAPNTQTASPRALADSLMQ 292
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q69XT0 Cluster: Putative uncharacterized protein
P0613F06.39; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0613F06.39 - Oryza sativa subsp. japonica (Rice)
Length = 309
Score = 36.3 bits (80), Expect = 1.0
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 464 RTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSL 643
RT Q S+R G +RP L R RPP RR + R R P+ R+ A P ++
Sbjct: 198 RTAFQPPSRRAGR-RRPAALPPRGRRRPPPSRRARRRPAFRPRAPSSSRRHAATAPPAAW 256
Query: 644 VRSPVPTPAAYRIP-XPPFSLREAWR 718
V SP P + P P ++R A R
Sbjct: 257 V-SPATAPPPHGPPATAPPTVRAAGR 281
>UniRef50_UPI0000F21822 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 232
Score = 34.7 bits (76), Expect = 3.1
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Frame = +2
Query: 359 RSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKR--PRLLAFF 532
R R ++S +R ++RR Q++ +Q + ++ S+ +R RL
Sbjct: 94 RRSQRLSQSRRRSQRLSQSRRRSQRLTQSRRRSQRLSQSRRRSQHLSQSRRRSQRLSQSR 153
Query: 533 HRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSL-VRSPVPTPAAYRIPXPPFSLRE 709
R + P + RRS +R R P G +FP G L +P P+A P + R
Sbjct: 154 RRSQRPSQRRNQRRSQRRRRCPNGH-HCLSFPGGRRLSFPTPRSRPSAAPRSRPASAPRP 212
Query: 710 AWRFLIAH 733
+W L+ H
Sbjct: 213 SWMVLVLH 220
>UniRef50_UPI00006D02D6 Cluster: hypothetical protein
TTHERM_00947600; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00947600 - Tetrahymena
thermophila SB210
Length = 534
Score = 34.7 bits (76), Expect = 3.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 443 NQGITQERTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTG 604
+Q I E + + S R K P+L F + L PPDE +K++ Q R P G
Sbjct: 109 SQIINNENIQQNRESIRLSRKKIPQLQPFIYGLDPPDEKNKHKEFRQAQRLPNG 162
>UniRef50_A4HKW0 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 2412
Score = 34.3 bits (75), Expect = 4.1
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +2
Query: 437 PQNQGITQERTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTGL*RY 616
P GI Q R Q+ GT P L+ H+L HH + RS+++ PT L
Sbjct: 513 PPRTGIRQGRLSAQR-----GTAAVPTTLSVPHKLEKSTSHHVHERSTKQ-TTPTALSST 566
Query: 617 QAFPPG 634
A PPG
Sbjct: 567 SAQPPG 572
>UniRef50_UPI0000E1F625 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 567
Score = 33.9 bits (74), Expect = 5.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 476 QKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPT---GL*RYQAFPP 631
Q AS PGT R A F PPD HH++ R + W + + + +AFPP
Sbjct: 153 QSASSGPGTKPRGVRPAPFADRGPPDRHHESSRGDKAWDSGSESPAQRKARAFPP 207
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.4
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 502 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 380
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 174 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 341
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.4
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 254 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 90
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q7Z6Z7 Cluster: E3 ubiquitin-protein ligase HUWE1; n=36;
Euteleostomi|Rep: E3 ubiquitin-protein ligase HUWE1 -
Homo sapiens (Human)
Length = 4374
Score = 33.5 bits (73), Expect = 7.1
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -2
Query: 710 LPEGRKAXQVSG-KRQGSEQESARGSFQGETPGIF--IVLSGFATSDLSVDFCDARQGGG 540
+P+ KA G KR EQ+ A GS T G+ I L G + + D A G
Sbjct: 975 VPKDEKAGTTQGGKRSDGEQDGAAGSMDASTQGLLEGIGLDGDTLAPMETDEPTASDSKG 1034
Query: 539 AYGKTPANAAFLR 501
TPA AA ++
Sbjct: 1035 KSKITPAMAARIK 1047
>UniRef50_UPI0000F1F0D1 Cluster: PREDICTED: similar to ZP1-related
protein; n=12; Danio rerio|Rep: PREDICTED: similar to
ZP1-related protein - Danio rerio
Length = 729
Score = 33.1 bits (72), Expect = 9.4
Identities = 21/90 (23%), Positives = 31/90 (34%)
Frame = +2
Query: 434 YPQNQGITQERTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTGL*R 613
YP NQ + P P +++ P H +R + W +
Sbjct: 600 YPWNQAPPAAAPTTPAPLEAPAYYPYPMYYPYYYGGFPHRRRHHHRHHHRHWYPESQESW 659
Query: 614 YQAFPPGSSLVRSPVPTPAAYRIPXPPFSL 703
Y PP P PTPAA ++ P F +
Sbjct: 660 YPMLPPYEFAQFQPPPTPAAPQVQYPVFPM 689
>UniRef50_Q988C1 Cluster: ABC transporter, permease protein; n=1;
Mesorhizobium loti|Rep: ABC transporter, permease
protein - Rhizobium loti (Mesorhizobium loti)
Length = 400
Score = 33.1 bits (72), Expect = 9.4
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +3
Query: 438 HRIRG*RRKEHVSKRPAKGQEP*KGRVCWRFSIGSAPLTSITKIDAQVRGGETRQD 605
HR R RR +R A P R C R SI +AP S T +DA TR+D
Sbjct: 7 HRQRSARRHRREHRRCAHQDRPPDDRTC-RMSIDTAPTASATALDA-TSAAATRRD 60
>UniRef50_Q6Z230 Cluster: Putative uncharacterized protein
OSJNBb0092C08.30; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OSJNBb0092C08.30 - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 33.1 bits (72), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 620 AFPPGSSLVRSPVPTPAAYRIPXPPFS 700
+ PP +V SP P PAA R P PF+
Sbjct: 135 SLPPSPLIVHSPTPNPAAARAPTAPFT 161
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,954,157
Number of Sequences: 1657284
Number of extensions: 16194534
Number of successful extensions: 48000
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 44709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47914
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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