Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_B01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   6.0  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    26   6.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   8.0  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 580 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPD 681
           + + K D ++ IPGV  +      S  DPC  PD
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
 Frame = +2

Query: 482 ASKRPGTVKRPRLLAFFHRLRPPDE--HHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSP 655
           + +RP T   P  +      R      H  N   +Q  R  T +      PP S L+ S 
Sbjct: 234 SGERPATFPNPTFIEGSDERRSASSLGHRTNNNQNQLIRFSTQIRSSSTSPPRSPLIISD 293

Query: 656 VPTPAAYRIPXPPFSLREAWRFL 724
            P+ +    P P      A  ++
Sbjct: 294 SPSSSIIHNPHPTHPSASAMNYM 316


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 488 KRPGTVKRPRLLAFFHRLRPPDEHHKNR--RSSQRWRNPTGL 607
           K+P T  +P  +  F+ L   D  HK+R  R  +R R+ TG+
Sbjct: 97  KKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGI 138


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 668 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGK 528
           QG+  +SAR S+ G+  GI  +L   + S    DF +    G G +G+
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGE 569


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
 Frame = +2

Query: 464 RTCEQKASKRPGTVKRPRLLAFFHRLRPPDEH---HKNRRSSQ---RWRNPTGL*RYQAF 625
           R  + K    P + ++   + FF+ LR   +    H  +RSS      +N T        
Sbjct: 662 RNSDSKLKLEPSSKEKSGSM-FFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSPSVS 720

Query: 626 PPGSSLVRSPVPTPAAYRIPXPPFSLREA 712
           P G S  +SPV TP     P P  + R A
Sbjct: 721 PVGFSFDKSPVTTPPLPTAPAPVITSRHA 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,864
Number of Sequences: 5004
Number of extensions: 60930
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)