Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_B01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 33 0.30
07_01_0710 - 5355277-5355666 31 1.2
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 29 3.6
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 4.8
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 6.4
03_06_0700 + 35616619-35617069,35619123-35619502 29 6.4
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.4
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.4
06_03_1310 + 29238644-29240260 28 8.4
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 28 8.4
06_01_0500 + 3584743-3585516 28 8.4
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 28 8.4
01_06_1377 + 36764461-36765339 28 8.4
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 33.1 bits (72), Expect = 0.30
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 516 VCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 668
VCWR + T D Q + +KD P + PSC L+F PL
Sbjct: 282 VCWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 332
>07_01_0710 - 5355277-5355666
Length = 129
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 721 KAPRFPKGERRXRYPV--SGRGRNRRAHEGASRGKRLV 614
+ P P GE R R SG GR RR EGA G LV
Sbjct: 88 RGPLAPAGESRERTSAANSGEGRRRRVAEGARDGSGLV 125
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 626 PPGSSLVRSPVPTPAAYRIPXP-PFSLREAWRFLIAH 733
PP + +P PA YR+P P S E W+ I H
Sbjct: 112 PPAHRRLNCLIPPPAGYRVPIRWPRSRDEVWKANIPH 148
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/68 (35%), Positives = 26/68 (38%)
Frame = +2
Query: 464 RTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSL 643
R C + GT R R A + L PP H R SS R P A GSS
Sbjct: 8 RPCSGVSPAVSGTSHRRRRPAAWRALAPPPPHAGLRLSSPAVRVPRAA-SSAAVEDGSSS 66
Query: 644 VRSPVPTP 667
VPTP
Sbjct: 67 NTDTVPTP 74
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 587 WRNPTGL*RYQAFPPGSSLVRSPVPTPAAYRIPXPPFSLREA 712
W P Y PPGSS+ P P P + PP+ ++ A
Sbjct: 436 WGQPPPYASYPPPPPGSSMYNPPPPAPG--QATPPPYGVQYA 475
>03_06_0700 + 35616619-35617069,35619123-35619502
Length = 276
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 635 SSLVRSPVPTPAAYRIPXPPFSLREAWRFLIAHAVGISVRCXSFA 769
S L + +P P + R+P P + WR + A S RC + A
Sbjct: 13 SPLPGASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRCLAAA 57
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 350 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 505
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 626 PPGSSLVRSPVPTPAAYRIPXP-PFSLREAWRFLIAH 733
P G +R VP P+ YR P P P S AW + H
Sbjct: 153 PTGRERLRCLVPAPSGYRNPFPWPASRDVAWFANVPH 189
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Frame = +2
Query: 437 PQNQGITQERTCEQKASKRPGTVKRPRLLAFFHRLRPPDEHHK-----NRRSSQRWRNPT 601
P + G + + ++ PG V P L PP H + S W P
Sbjct: 431 PSSHGASPPSSSSSPPTEHPGYVLPP-LTPPPPTTTPPGHHAPVPGTPSSPPSSSWSPPQ 489
Query: 602 GL*RYQAFPPGSSLV-RSPVPTPAAYRIPXPP 694
G FPP + SP P P+ ++P PP
Sbjct: 490 GGGGKLPFPPVHGVAYSSPPPPPSGDKLPFPP 521
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 516 VCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 668
V WR + T D Q + +KD P + PSC L+F PL
Sbjct: 620 VGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 670
>06_01_0500 + 3584743-3585516
Length = 257
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/84 (27%), Positives = 31/84 (36%)
Frame = +2
Query: 488 KRPGTVKRPRLLAFFHRLRPPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTP 667
K+PG+ K P R PPD H + R + +R P S SP +P
Sbjct: 5 KKPGSKKMPTPAVMRIRSPPPDPHRRARAAPRRCIPPLA-------SDSESSASSPTTSP 57
Query: 668 AAYRIPXPPFSLREAWRFLIAHAV 739
AA P + + F H V
Sbjct: 58 AAAAAALPGIA-QARHEFFAKHTV 80
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +3
Query: 516 VCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 668
V WR + T D Q + +KD P + PSC L+F PL
Sbjct: 494 VGWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 544
>01_06_1377 + 36764461-36765339
Length = 292
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 626 PPGSSLVRSPVPTPAAYRIPXPP 694
PP SS P P P AY P PP
Sbjct: 164 PPSSSPYYFPPPPPPAYSAPPPP 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,125
Number of Sequences: 37544
Number of extensions: 493230
Number of successful extensions: 1642
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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