Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A24
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    41   1e-05
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   9.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 399 MSEKSSPIKY---FLCGGFGGVCTVLSGHPMDTIKVRLQTMPLPKP-GEVALYAGTWDCF 566
           MS  + P+ +   FL GG     +  +  P++ +K+ LQ   + K   E   Y G  DCF
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 567 KKTVQKEGFRGLYKGMSAPLTGVAPIFAISF 659
            +  +++GF   ++G  A +    P  A++F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNF 91


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 399 MSEKSSPIKY---FLCGGFGGVCTVLSGHPMDTIKVRLQTMPLPKP-GEVALYAGTWDCF 566
           MS  + P+ +   FL GG     +  +  P++ +K+ LQ   + K   E   Y G  DCF
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 567 KKTVQKEGFRGLYKGMSAPLTGVAPIFAISF 659
            +  +++GF   ++G  A +    P  A++F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNF 91


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 236 WCKSKNCSSVDVAF 277
           W K++NCS +  A+
Sbjct: 110 WAKNENCSGITSAY 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,383
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)