Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_A22
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 30 0.39
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 29 0.68
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.7
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 6.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 8.4
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 8.4
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 8.4
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 8.4
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 8.4
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVEE-------GEGQNDNSGDSDEAPPKEDED 314
+EE D GDEE EE GEG D G++D +E+E+
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEE 230
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKED 308
+EE DG G+ + +GEG+ND G +E + D
Sbjct: 201 EEEDDGDGDGEGD-GDGEGENDGKGSEEEEEEEID 234
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVE-EGEGQNDNSGDSDEAPPKEDED 314
DEE + GD + E +G+G+ +N G E +E+ D
Sbjct: 197 DEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEID 234
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 234 DEEVEEGEGQNDNSGDSDEAPPKEDE 311
+EE +E E + D G+ DE +ED+
Sbjct: 180 EEEADEMEEEFDEEGEGDEEEEEEDD 205
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEA 293
D+E SF +EE++E E +N +S D D A
Sbjct: 146 DDEFPSSFPSEEELQEPEQENIDSDDEDLA 175
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -3
Query: 148 ARKDKGRAVFATNGN*FKKLMPPSLLDEPSKQLQXLKDSLIVEVXK 11
+RKD+ + T+ N K +PP+L + +QLQ K++ +E K
Sbjct: 59 SRKDQSENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGK 104
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 201 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYS 320
++E+ +GS + E + SGDSD + E E S
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSS 233
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 198 ASDEEVDGSFAGDEEVEEGEGQNDNSGDSD----EAPPKEDEDYSPXR 329
+S+ + + DEE EEG ++ DSD E+ +DED SP R
Sbjct: 221 SSESDRVSQISDDEEDEEGSADEEDEEDSDVELSESSLSDDED-SPLR 267
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 198 ASDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYS 320
+S +E D S + E E + +S DS+ ED D S
Sbjct: 107 SSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 147
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +1
Query: 532 NTPSTTTASDSGSGMPTVEEVCSSFGLTDVDIQYADADYENLTTYKLFQQHVRPMLVKEN 711
+T TTAS +G G PT T + A Y TT+ ++
Sbjct: 823 STIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGTATYTEPTTFTSTFSFTTTIIGGTT 882
Query: 712 PKVPVSKVNDASS 750
+PV+ N +SS
Sbjct: 883 TIIPVNPGNPSSS 895
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 201 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEA 293
S+EEVDG G E E E + N D +++
Sbjct: 225 SEEEVDGHSEGKELAGESEEEGSNVDDVEDS 255
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 210 EVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDYSPXRW 332
EV G+ D+EVEE ++D+ D DE +++++ + RW
Sbjct: 195 EVQGN---DDEVEE---EDDDDDDEDEDEDEDEDNNNNNRW 229
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 210 EVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDY 317
+++ F+G E + +G DN S +P + D+D+
Sbjct: 281 DLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDF 316
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDEDY 317
D+E+ G+E ++ E + N S+ P KE+E Y
Sbjct: 8 DDELFKDLYGEENEKKVESASGNQETSNVTPTKENEGY 45
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 198 ASDEEVDGSFAGDEEV-EEGEGQNDNSGDSDEAPPKEDE 311
+S+EE + D EV +E E ++++ +S+E E+E
Sbjct: 87 SSEEEEETESEEDSEVSDESESESESESESEEESESEEE 125
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 201 SDEEVDGSFAGDEEVEEGEGQNDNSG----DSDEAPPKE 305
++E++ + +GDEE EE DNS + D AP K+
Sbjct: 142 TEEDLVETVSGDEESEEESESEDNSASEEDELDSAPAKK 180
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 201 SDEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPP 299
SD+E+ S +GDE VE G+ + S SDEA P
Sbjct: 497 SDQELLLS-SGDERVERGKIGSIKSVKSDEATP 528
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 532 NTPSTTTASDSGSGMPTVEEVCSSFGLTD 618
N P TT + G +E CS FGL D
Sbjct: 33 NFPFTTIEPNRAIGYAQIECACSRFGLQD 61
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 204 DEEVDGSFAGDEEVEEGEGQNDNSGDSDEAPPKEDED 314
DEE+ A E EEGE +++ + E P + ED
Sbjct: 52 DEEIPSLTAELSEEEEGEYSSESGRSTPELSPDDFED 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,954
Number of Sequences: 5004
Number of extensions: 51331
Number of successful extensions: 199
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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