Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A16
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    57   4e-09
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    30   0.39 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   8.5  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +1

Query: 601 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPP 762
           +K+ F IKEG +++I + F VQ E++ GL+YVQ   R G   DK + M+GSY P
Sbjct: 100 RKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKTSTMIGSYGP 153



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 393 EKTIEEILAADQEDESLRKYKEAL 464
           +K++ E +  D EDESL+K+K +L
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL 55


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 393  EKTIEEILAADQEDESLRKYKEALLGQAQAXAVIVE 500
            EKT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 104 WHLXGPVLYYLKFDDRPEALW 166
           WH+ G  ++Y +F++  +A W
Sbjct: 386 WHITGAPMFYEEFNELYQAFW 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,970
Number of Sequences: 5004
Number of extensions: 58546
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)