Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A16
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667...    52   8e-07
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164...    49   6e-06
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480...    46   5e-05
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    30   2.2  
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   5.1  
07_01_0224 - 1646114-1648396                                           29   6.7  

>06_02_0132 -
           12166009-12166089,12166197-12166321,12166489-12166710,
           12168194-12168260,12168424-12168741
          Length = 270

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 21/56 (37%), Positives = 34/56 (60%)
 Frame = +1

Query: 601 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPPKL 768
           K+  F +KEG  YR++  F V   IV GL+Y    ++ G++ DK   M+G++ P+L
Sbjct: 162 KEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLGTFSPQL 217



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 390 PEKTIEEILAADQEDESLRKYKEALLGQAQAXAV--IVEPD 506
           P  +I+E L  D+EDESLR++KE LLG     +V   +EPD
Sbjct: 94  PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD 134


>01_06_1776 -
           39815634-39815714,39815761-39815927,39816278-39816496,
           39816614-39816680,39816771-39816932
          Length = 231

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%)
 Frame = +1

Query: 601 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPPKL 768
           K   F +K+G  Y  R  FIV   IV GLKY    ++ GV+ +    M+G++ P+L
Sbjct: 109 KGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGTFSPQL 164



 Score = 35.5 bits (78), Expect = 0.059
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +3

Query: 390 PEKTIEEILAADQEDESLRKYKEALLGQ 473
           P+  ++E L  D++DESLR++KE LLGQ
Sbjct: 42  PQVPLKEQLELDKDDESLRRWKEQLLGQ 69


>02_05_0539 +
           29846439-29846711,29846819-29846885,29847832-29848050,
           29848200-29848324,29848423-29848503
          Length = 254

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +1

Query: 613 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPPK 765
           F +KEG  Y+++  F V   IV GL+Y    ++ G++ D    M+G++ P+
Sbjct: 150 FTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGTFSPQ 200



 Score = 36.3 bits (80), Expect = 0.034
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 390 PEKTIEEILAADQEDESLRKYKEALLGQAQAXAV--IVEPD 506
           P  +I++ L  D++DESLR++KE LLG     +V   +EPD
Sbjct: 79  PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD 119


>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 381 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAXAVIVEP 503
           KPPP    E + AAD E E+ RK +E     A      V P
Sbjct: 35  KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP 75


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 627 GCTIPNKDRFYRXTRDRARSEVRAEDLQTGRXI*QDDSYGRL 752
           G      D F+  T    RS VR  DL+TG+ + Q +  GRL
Sbjct: 91  GLLYGGNDTFFESTGLYHRSSVRRVDLKTGKVLVQHEMDGRL 132


>07_01_0224 - 1646114-1648396
          Length = 760

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  LCADWHLXGPVLYYLKFDDRPEALWSVIFLV 184
           LC  WHL   VL+ L  +++P  L+S +F++
Sbjct: 69  LCTFWHLNSLVLHKLHMENQP-VLFSAVFIL 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,923,670
Number of Sequences: 37544
Number of extensions: 381987
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)