Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A16
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    52   4e-07
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    52   4e-07

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/50 (50%), Positives = 30/50 (60%)
 Frame = +1

Query: 619 IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPPKL 768
           IKEG  YR+   F VQREI  GL Y  K  R G+  +   +M+GSY PKL
Sbjct: 94  IKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKL 143



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +3

Query: 378 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAXAVIVEPDDP 512
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ     VIV+  +P
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQG---TVIVDEKNP 57


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 25/50 (50%), Positives = 30/50 (60%)
 Frame = +1

Query: 619 IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVQFDKMTHMVGSYPPKL 768
           IKEG  YR+   F VQREI  GL Y  K  R G+  +   +M+GSY PKL
Sbjct: 94  IKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMMGSYAPKL 143



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +3

Query: 378 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAXAVIVEPDDP 512
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ     VIV+  +P
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQG---TVIVDEKNP 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,236
Number of Sequences: 27780
Number of extensions: 332191
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)