Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A14
         (1076 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.6  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    27   1.9  
03_01_0515 - 3864796-3865425                                           30   3.6  
01_05_0490 + 22672241-22674679                                         24   4.1  
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012...    29   6.4  
08_01_0059 - 394001-394708                                             29   8.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +2

Query: 470 PXPPPPXKXXXNXPPXXXXXXSXXLXGXGGGXXXXXXXXXXXPPPPPRPXSXP 628
           P PPPP K     PP      +        G           PPPPP+  S P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +1

Query: 871  PAPXRXRXGXXXSPTPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXXPPXSXX 1050
            P P +        P PP       P   P P      P PP   +     PP  PP    
Sbjct: 316  PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP--PPPGGK 373

Query: 1051 RFRXPP 1068
            +   PP
Sbjct: 374  KGGPPP 379


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 26.6 bits (56), Expect(2) = 1.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 596 PPPPPRPXSXP 628
           PPPPPRP S P
Sbjct: 637 PPPPPRPGSLP 647



 Score = 22.6 bits (46), Expect(2) = 1.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 470 PXPPPPXKXXXNXPP 514
           P PPPP K     PP
Sbjct: 625 PPPPPPGKPGGPPPP 639


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 19/72 (26%), Positives = 22/72 (30%)
 Frame = +1

Query: 853  PXXXXXPAPXRXRXGXXXSPTPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXX 1032
            P      +P     G    P PP     + P   P P      P PP         PP  
Sbjct: 53   PPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLP------PPPPPPAASPPPPPPSP 106

Query: 1033 PPXSXXRFRXPP 1068
            PP S  +   PP
Sbjct: 107  PPPSPVKSSPPP 118


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 24.2 bits (50), Expect(2) = 4.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 596 PPPPPRPXSXPXF 634
           PPPPP P   P F
Sbjct: 664 PPPPPPPQQQPPF 676



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +2

Query: 470 PXPPPPXKXXXNXPPXXXXXXSXXLXGXGGGXXXXXXXXXXXPPPPPRP 616
           P P PP +     PP         L   GG             PPPP P
Sbjct: 599 PAPAPPRRPPPPPPPPPSSIF-YNLFKKGGSKSRRIHSVAPPQPPPPPP 646


>09_04_0081 - 14400293-14400397,14400953-14401036,14401144-14401214,
            14401293-14401380,14401487-14401678,14401772-14402704
          Length = 490

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 895  GXXXSPTPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXXPP 1038
            G    P PP       P  HP P      P PP         P   PP
Sbjct: 218  GAPPPPPPPPPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPP 265


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +1

Query: 910  PTPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXXPPXSXXRFRXPP 1068
            P PP R         P P R    P PP          P  PP        PP
Sbjct: 4    PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.143    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,168
Number of Sequences: 37544
Number of extensions: 311636
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3211228900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)