Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A14
         (1076 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    31   1.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   7.6  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
 Frame = +1

Query: 871  PAPXRXRXGXXXSP-TPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXXPPXSX 1047
            P P + R G    P  PP R   T P   P P R      PP         PP  PP   
Sbjct: 126  PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRR------PPMTPPSPQRRPPRTPPSPE 179

Query: 1048 XRF--RXPP 1068
             R   R PP
Sbjct: 180  PRNPPRTPP 188


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +2

Query: 470 PXPPPPXKXXXNXPPXXXXXXSXXLXGXGGGXXXXXXXXXXXPPPPP 610
           P PPPP       PP         L G   G           PPPPP
Sbjct: 538 PPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPP 584


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
            related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +1

Query: 889  RXGXXXSPTPPXRXXXTXPXXHPXPXRXXXXPXPPXXXEXXXXXPPXXPPXSXXRFRXPP 1068
            R G    PTP  +         P P      P PP         PP  PP        PP
Sbjct: 24   RGGCGGCPTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPP 83


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 27/106 (25%), Positives = 27/106 (25%)
 Frame = -3

Query: 786 GXGGGXXXXXXXAPXXXXXXPPXXXXXXXXAGXXXXXXRXXXGXXXXPXXXXXGXXXGRG 607
           G GGG       AP      PP         G          G          G   G G
Sbjct: 41  GCGGGGGCGGGCAPP-----PPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG-G 94

Query: 606 GGGGXXXXXXXXXXLPPPXPXXKXXXXXXXXGGXFXXXFXGGGGXG 469
           GGGG            PP P           GG       GGGG G
Sbjct: 95  GGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGG 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.143    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,995,435
Number of Sequences: 27780
Number of extensions: 169618
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2887577688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)