Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A13
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    34   0.002
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    28   0.13 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +3

Query: 618 FAMKVLKKASIVRNQKDTAHTKAERNILE-AVKHPFIVELVYAFQTGGKL 764
           +A+K+LKK  I+++  D   T  E+ +L  + K PF+V+L   FQT  +L
Sbjct: 12  YAIKILKKDIIIQDD-DVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRL 60



 Score = 29.9 bits (64), Expect = 0.032
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 740 CFPDRWKVVXILEYLXGGELFMHLEREGIXLEDTACFY 853
           CF    ++  ++EY+ GG+L   +++ G   E  A FY
Sbjct: 53  CFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPVAVFY 90


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 27/110 (24%), Positives = 43/110 (39%)
 Frame = +2

Query: 524 QDFELRKVLGKGGYGKVFQVRKITGQDAGCPFCYEXXXXXXXXXXXXRYCTYKG*KEYIG 703
           QD      LG GG+G+V ++ +I G D+   F  +            +       K  +G
Sbjct: 365 QDLRPLATLGVGGFGRV-ELVQIAG-DSSRSFALKQMKKAQIVETRQQQHIMSE-KRIMG 421

Query: 704 SCKASIHSRTSVCFPDRWKVVXILEYLXGGELFMHLEREGIXLEDTACFY 853
                   +    F DR  +  ++E   GGEL+  L  +G   + T  FY
Sbjct: 422 EADCDFVVKLFKTFKDRKYLYMLMEACLGGELWTVLRDKGHFDDGTTRFY 471


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 98  MFFFFVWELHPPGSLCCASIGVY 166
           +FF  V E+ PP SL    +G Y
Sbjct: 288 VFFLLVVEIIPPTSLVVPLLGKY 310


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 98  MFFFFVWELHPPGSLCCASIGVY 166
           +FF  V E+ PP SL    +G Y
Sbjct: 288 VFFLLVVEIIPPTSLVVPLLGKY 310


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -3

Query: 162 TPIDAQHNEPGGCNS-HT 112
           +P  A+H   GGCN  HT
Sbjct: 393 SPDSARHQRIGGCNGLHT 410


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 98  MFFFFVWELHPPGSLCCASIGVY 166
           +FF  + E+ PP SL    +G Y
Sbjct: 293 VFFLLLAEIIPPTSLAIPLLGKY 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,272
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)