Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_A11
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 8e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.041
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.052
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 0.55
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.1 bits (87), Expect = 8e-04
Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Frame = -1
Query: 631 PPPPPPXXRXGGXXGGGGGGGXXXXPXPP-------XGGGXFXXXKNXPPPPPPXXKKKX 473
PPPPPP R G G G P PP G PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 472 XGXGXPPFS 446
G PP S
Sbjct: 372 TGRQPPPLS 380
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPP 590
PP G PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 537 PPXGGXGXXXXPPPPPPPXXPP 602
PP G PP P PP PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPP 425
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Frame = -1
Query: 556 PXPPXGGGXFXXXKNXPPPP--PPXXKKKXXGXGXPPFSPP 440
P PP G N PP P P PP PP
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.041
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPP 590
PPP G G PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +1
Query: 535 PPPXGXXXXXXXPPPPPPXXXPPXAXGGGGGXXXXPXXGGXP 660
PPP PPPPPP PP A GG P P
Sbjct: 763 PPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEP 801
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPP 590
PPP G PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.29
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = -1
Query: 631 PPPPPPXXRXGGXXGGGGGGGXXXXPXPPXGGGXFXXXKNXPPPPPPXXKKKXXGXGXPP 452
PPPPPP P P GG PPPPPP G G PP
Sbjct: 732 PPPPPPAV----IVPTPAPAPIPVPPPAPIMGGP-------PPPPPPPG---VAGAGPPP 777
Query: 451 FSPPP 437
PPP
Sbjct: 778 PPPPP 782
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -2
Query: 681 APFFGGXXXPPPXGG--XXXPPPPPXXGRGXXXGG 583
AP GG PPP G PPPPP GG
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPPXXPPXRXXGGG 623
PPP G PPPPPP PP GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPP--PPPAVSAGG 789
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 528 KXPPPXGGXGXXXXPPPPPPPXXPPXRXXGGGGGGXXPP 644
K PPP P P P P PP GG PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPPXXPPXRXXGGGGGGXXPP 644
PPP G PPPPPP PP G G G PP
Sbjct: 752 PPPAPIMGG----PPPPPP--PP----GVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 534 PPPXGGXGXXXXPPPPPPP 590
PPP G PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect(2) = 0.052
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 556 PXPPXGGGXFXXXKNXPPPPPPXXKKK 476
P PP F PPPPPP KK
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 514 NXPPPPPPXXKKKXXGXGXPPFSPPP 437
N PPPPPP + PP PPP
Sbjct: 8 NPPPPPPPPGFEP---PSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 556 PXPPXGGGXFXXXKNXPPPPPPXXKKK 476
P PP G + PPPPP KK+
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 22.6 bits (46), Expect(2) = 0.052
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 643 GGXXPPPPPP 614
G PPPPPP
Sbjct: 7 GNPPPPPPPP 16
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect(2) = 0.55
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 576 PPPPPXXPPXRXXGGG 623
PPPPP PP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 22.6 bits (46), Expect(2) = 0.55
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 570 PPPPPPPXXP 599
P PPPPP P
Sbjct: 905 PTPPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 570 PPPPPPPXXPP 602
PPPPPPP PP
Sbjct: 238 PPPPPPPTLPP 248
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = -1
Query: 631 PPPPPPXXRXGGXXGGGGGGGXXXXPXPPXGGGXFXXXKNXPPPPPPXXKKKXXGXGXPP 452
PPPPPP PP G P P P K+ P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMP 1941
Query: 451 FSPP 440
+PP
Sbjct: 1942 NAPP 1945
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 525 KKXPPPXGGXGXXXXPPPPPPPXXPP 602
K P G PPPPPPP PP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPP--PP 314
Score = 25.0 bits (52), Expect(2) = 2.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 643 GGXXPPPPPP 614
GG PPPPPP
Sbjct: 303 GGLPPPPPPP 312
Score = 21.0 bits (42), Expect(2) = 2.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 508 PPPPPP 491
PPPPPP
Sbjct: 308 PPPPPP 313
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -2
Query: 642 GGXXXPPPPPXXGRGXXXGGGGGGXXXXXPXPXGGG 535
GG PPP G G G GG G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.155 0.540
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,023
Number of Sequences: 5004
Number of extensions: 33406
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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