Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_A11
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 570  PPPPPPP 590
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 570  PPPPPPP 590
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 631  PPPPPPXXRXG 599
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 555 GXXXXPPPPPPPXXPP 602
           G    PP P PP  PP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 517 KNXPPPPPP 491
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 570 PPPPPPPXXPP 602
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 571 PPPPPPXXXPP 603
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 643  GGXXPPPPPP 614
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 648  PXGGXXXPPPPP 613
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.155    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,808
Number of Sequences: 438
Number of extensions: 6982
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)